Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0028
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 231 4e-61
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 224 5e-59
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 217 7e-57
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 216 2e-56
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 216 2e-56
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 216 2e-56
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 149 3e-36
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 149 3e-36
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 113 2e-25
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 113 2e-25
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 111 7e-25
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 111 7e-25
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 110 1e-24
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 106 1e-23
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 106 1e-23
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 104 6e-23
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 104 6e-23
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 104 6e-23
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 104 6e-23
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 104 8e-23
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 102 2e-22
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 99 2e-21
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 84 1e-16
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 81 6e-16
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 81 6e-16
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 231 bits (565), Expect = 4e-61
Identities = 105/132 (79%), Positives = 114/132 (86%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH+QAGQCGNQIGAK WE+ISDEHGI PTGAY+GDSDLQLERINVYYNEASGGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA L DLEPGT DSVR+GP Q+FRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE++SC+ G
Sbjct: 121 RKEAESCDCLQG 132
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+THSL GTLL K REE P R
Sbjct: 134 QMTHSLGGGTGSGMGTLLISKIREEYPDR 162
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 224 bits (548), Expect = 5e-59
Identities = 101/132 (76%), Positives = 111/132 (84%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH+QAGQCGNQIGAK WE+ISDEHGI P G Y G+SDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP Q+FRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE++ C+ G
Sbjct: 121 RKEAEGCDCLQG 132
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDR 162
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 217 bits (530), Expect = 7e-57
Identities = 97/132 (73%), Positives = 110/132 (83%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH+QAGQCGNQIG+K WE+ISDEHGI P G + G+SDLQLERI+VYYNEA+ GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP Q+FRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVI 120
Query: 407 RKESKSCNVPTG 442
RKE++ C+ G
Sbjct: 121 RKEAEGCDCLQG 132
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEFPDR 162
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 216 bits (527), Expect = 2e-56
Identities = 96/132 (72%), Positives = 110/132 (83%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH+QAGQCGNQIG+K WE+ISDEHGI P G + G++DLQLERI+VYYNEA+ GKYV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP Q+FRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVI 120
Query: 407 RKESKSCNVPTG 442
RKE++ C+ G
Sbjct: 121 RKEAEGCDCLQG 132
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDR 162
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 216 bits (527), Expect = 2e-56
Identities = 98/132 (74%), Positives = 109/132 (82%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH+QAGQCGNQIG+K WE+ISDEHGI P+G Y GDSDLQLERINVYYNEA KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP Q+FRPDN+VF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE++S + G
Sbjct: 121 RKEAESTDCLQG 132
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDR 162
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 216 bits (527), Expect = 2e-56
Identities = 98/132 (74%), Positives = 109/132 (82%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH+QAGQCGNQIG+K WE+ISDEHGI P+G Y GDSDLQLERINVYYNEA KYV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP Q+FRPDN+VF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE++S + G
Sbjct: 121 RKEAESTDCLQG 132
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDR 162
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 149 bits (360), Expect = 3e-36
Identities = 67/128 (52%), Positives = 89/128 (69%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
M+EI+++Q GQCGNQIGAK WE IS+EHG+ G Y GD+ QLERI YY E G KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRAIL DL+P + + VRS ++F P+N V +SGAG NW+ G+Y GAE+ VL
Sbjct: 61 PRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLSVI 120
Query: 407 RKESKSCN 430
R+E+++ +
Sbjct: 121 RREAEAAD 128
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 149 bits (360), Expect = 3e-36
Identities = 67/128 (52%), Positives = 89/128 (69%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
M+EI+++Q GQCGNQIGAK WE IS+EHG+ G Y GD+ QLERI YY E G KYV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRAIL DL+P + + VRS ++F P+N V +SGAG NW+ G+Y GAE+ VL
Sbjct: 61 PRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLSVI 120
Query: 407 RKESKSCN 430
R+E+++ +
Sbjct: 121 RREAEAAD 128
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 113 bits (271), Expect = 2e-25
Identities = 49/128 (38%), Positives = 72/128 (56%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G D E ++++ G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G EL +VLD
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 407 RKESKSCN 430
R+ + +C+
Sbjct: 121 RRLADNCS 128
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 113 bits (271), Expect = 2e-25
Identities = 49/128 (38%), Positives = 72/128 (56%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G D E ++++ G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G EL +VLD
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 407 RKESKSCN 430
R+ + +C+
Sbjct: 121 RRLADNCS 128
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 111 bits (266), Expect = 7e-25
Identities = 49/128 (38%), Positives = 73/128 (57%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G S + E ++++ G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G EL +VLD
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 407 RKESKSCN 430
R+ + +C+
Sbjct: 121 RRLADNCS 128
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 111 bits (266), Expect = 7e-25
Identities = 49/128 (38%), Positives = 73/128 (57%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G S + E ++++ G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G EL +VLD
Sbjct: 61 PRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRI 120
Query: 407 RKESKSCN 430
R+ + +C+
Sbjct: 121 RRLADNCS 128
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 110 bits (264), Expect = 1e-24
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLE--RINVYYNEASGGK 220
MREIV + GQ G QIG WE+ EHGI P G D+ +E N +++E GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRAI DLEP D VR+G ++F P+ + + A N+A GHYT G EL V+D
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVMD 120
Query: 401 AXRKESKSC 427
R+ ++ C
Sbjct: 121 RVRRLTERC 129
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 106 bits (255), Expect = 1e-23
Identities = 46/128 (35%), Positives = 71/128 (55%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G + + ++++ G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G EL + LD
Sbjct: 61 PRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLDRI 120
Query: 407 RKESKSCN 430
R+ + +C+
Sbjct: 121 RRLADNCS 128
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 106 bits (255), Expect = 1e-23
Identities = 46/128 (35%), Positives = 71/128 (55%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G + + ++++ G+YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G EL + LD
Sbjct: 61 PRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLDRI 120
Query: 407 RKESKSCN 430
R+ + +C+
Sbjct: 121 RRLADNCS 128
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 105 bits (253), Expect = 3e-23
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL---QLERINVYYNEASGGK 220
RE++ + GQ G QIG WE+ EHGI P G YH + D + E IN ++ E +GGK
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDG-YHVEDDTYDEETETINTFFAETAGGK 66
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPR + DLEP D VR+G +F P+ + + A +A G YT G E+ V+D
Sbjct: 67 HVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMD 126
Query: 401 AXRKESKSCN 430
++ +++CN
Sbjct: 127 RVKRLAENCN 136
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 104 bits (250), Expect = 6e-23
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAY-HGDSDLQLERINVYYNEASGGKYV 226
RE V + GQ G QIG WE+ EHG+ G + + + + + +++E+ GK+V
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHV 65
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRAI DLEP D +R+G +F PD + + A N+A GHYT G EL VLD
Sbjct: 66 PRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRI 125
Query: 407 RKESKSC 427
RK++++C
Sbjct: 126 RKQTENC 132
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 104 bits (250), Expect = 6e-23
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 220
MRE++ + GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA++ DLEP D +R+G +F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 401 AXRKESKSC 427
R+ + +C
Sbjct: 121 RIRRLADNC 129
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 104 bits (250), Expect = 6e-23
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 220
MRE++ + GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA++ DLEP D +R+G +F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 401 AXRKESKSC 427
R+ + +C
Sbjct: 121 RIRRLADNC 129
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 104 bits (250), Expect = 6e-23
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 220
MRE++ + GQ G QIG WE+ EHGI P G D L + + +++E G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA++ DLEP D +R+G +F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 401 AXRKESKSC 427
R+ + +C
Sbjct: 121 RIRRLADNC 129
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 104 bits (249), Expect = 8e-23
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = +2
Query: 44 KMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLE--RINVYYNEASGG 217
+ RE++ + GQ G Q+G WE+ EHGI P G + + L ++ N +++E G
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 218 KYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVL 397
K+VPRAI+ DLEP D +R+G +F P+ + + A N+A GHYT G E+ V+
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVVM 124
Query: 398 DAXRKESKSC 427
D R+ ++C
Sbjct: 125 DRVRRLVENC 134
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 102 bits (245), Expect = 2e-22
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGKY 223
RE++ + GQ G QIG WE+ EHGI P G D L + + +++E G++
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 224 VPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDA 403
VPRA++ DLEP D +R+G +F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDR 120
Query: 404 XRKESKSC 427
R+ + +C
Sbjct: 121 IRRLADNC 128
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 99 bits (238), Expect = 2e-21
Identities = 45/127 (35%), Positives = 71/127 (55%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MRE++ + GQ G QIG WE+ EHGI P G + D + ++++ G++V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSM-EPDGNSGSLGTFFSDTGYGRHV 59
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR+I DLEP D +R+G ++F P+ + + A N+A GHYT G E+ + LD
Sbjct: 60 PRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTTLDRI 119
Query: 407 RKESKSC 427
R+ + +C
Sbjct: 120 RRLANNC 126
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Frame = +2
Query: 125 EHGIXPTGAYHGDSDL---QLERINVYYNEASGGKYVPRAILXDLEPGTXDSVRSGPXXQ 295
EHGI P G YH + D + E IN ++ E +GGK+VPR + DLEP D VR+G
Sbjct: 5 EHGIQPDG-YHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGTYRS 63
Query: 296 IFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRKESKSCN 430
+F P+ + + A +A G YT G E+ V+D ++ +++CN
Sbjct: 64 LFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDRVKRLAENCN 108
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 81.4 bits (192), Expect = 6e-16
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Frame = +2
Query: 56 IVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYVPRA 235
++ + GQCGNQ+ W+ + DEHGI G + D+ ++ ++Y +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRA 65
Query: 236 ILXDLEPGTXDSVRSGP-XXQIFRPDNFVFXQ--SGAGINWAXGHYTXGAELXXSVLDAX 406
+L DLEP + + P +F DN GAG NWA G Y G E+ ++D
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDII 124
Query: 407 RKESKSCN 430
+E+++ N
Sbjct: 125 IREAENTN 132
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 81.4 bits (192), Expect = 6e-16
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Frame = +2
Query: 56 IVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYVPRA 235
++ + GQCGNQ+ W+ + DEHGI G + D+ ++ ++Y +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRA 65
Query: 236 ILXDLEPGTXDSVRSGP-XXQIFRPDNFVFXQ--SGAGINWAXGHYTXGAELXXSVLDAX 406
+L DLEP + + P +F DN GAG NWA G Y G E+ ++D
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDII 124
Query: 407 RKESKSCN 430
+E+++ N
Sbjct: 125 IREAENTN 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,903
Number of Sequences: 27780
Number of extensions: 167437
Number of successful extensions: 272
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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