Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0028
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 219 2e-57
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 215 2e-56
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 214 5e-56
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 213 8e-56
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 213 8e-56
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 213 1e-55
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 211 3e-55
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 211 4e-55
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 211 4e-55
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 110 8e-25
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 110 1e-24
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 110 1e-24
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 107 6e-24
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 107 6e-24
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 105 3e-23
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 105 3e-23
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 87 9e-18
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 87 9e-18
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 28 5.8
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 219 bits (534), Expect = 2e-57
Identities = 98/133 (73%), Positives = 112/133 (84%), Gaps = 1/133 (0%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDS-DLQLERINVYYNEASGGKY 223
MREI+H+Q GQCGNQIG+K WE+I DEHG+ PTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 224 VPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDA 403
VPRA+L DLEPGT DS+RSGP QIFRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 404 XRKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 VRKEAENCDCLQG 133
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 135 QVCHSLGGGTGSGMGTLLISKIREEYPDR 163
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 215 bits (526), Expect = 2e-56
Identities = 96/132 (72%), Positives = 110/132 (83%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIG+K WE++ DEHGI PTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRAIL DLEPGT DSVR+GP QIFRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 RKEAENCDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 214 bits (523), Expect = 5e-56
Identities = 97/133 (72%), Positives = 110/133 (82%), Gaps = 1/133 (0%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDS-DLQLERINVYYNEASGGKY 223
MREI+H+Q GQCGNQIG+K WE+I DEHGI TG Y GD+ DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 224 VPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDA 403
VPRA+L DLEPGT DS+RSGP QIFRPDNFVF QSGAG NWA GHYT GAEL +VLD
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 404 XRKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 VRKEAENCDCLQG 133
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 135 QVCHSLGGGTGSGMGTLLISKIREEYPDR 163
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 213 bits (521), Expect = 8e-56
Identities = 96/132 (72%), Positives = 108/132 (81%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIGAK WE++ EHGI PTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DS+RSGP Q FRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 RKEAENCDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 213 bits (521), Expect = 8e-56
Identities = 96/132 (72%), Positives = 108/132 (81%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIGAK WE++ EHGI PTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DS+RSGP Q FRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 RKEAENCDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 213 bits (519), Expect = 1e-55
Identities = 97/132 (73%), Positives = 108/132 (81%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIGAK WE+I EHGI TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DS+RSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 RKEAENCDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 211 bits (516), Expect = 3e-55
Identities = 95/132 (71%), Positives = 109/132 (82%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIG+K WE+++ EHGI TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 RKEAENCDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 211 bits (515), Expect = 4e-55
Identities = 97/132 (73%), Positives = 108/132 (81%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIGAK WE+I DEHGI TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DS+RSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++ + G
Sbjct: 121 RKEAENSDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 211 bits (515), Expect = 4e-55
Identities = 94/132 (71%), Positives = 108/132 (81%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREI+H+Q GQCGNQIGAK WE++ EHGI TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRA+L DLEPGT DSVRSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE+++C+ G
Sbjct: 121 RKEAENCDCLQG 132
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
Q+ HSL GTLL K REE P R
Sbjct: 134 QVCHSLGGGTGSGMGTLLISKIREEYPDR 162
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 110 bits (265), Expect = 8e-25
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MREI+ + GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ + L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RLRKLADNC 129
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 110 bits (264), Expect = 1e-24
Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RVRKLADNC 129
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 110 bits (264), Expect = 1e-24
Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RVRKLADNC 129
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 107 bits (258), Expect = 6e-24
Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RIRKLADNC 129
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 107 bits (258), Expect = 6e-24
Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RIRKLADNC 129
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 105 bits (252), Expect = 3e-23
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RIRKLADNC 129
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 105 bits (252), Expect = 3e-23
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 401 AXRKESKSC 427
RK + +C
Sbjct: 121 RIRKLADNC 129
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 87.4 bits (207), Expect = 9e-18
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYVP 229
REI+ LQ GQCGNQIG + W+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 230 RAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQ--SGAGINWAXGHYTXGAELXXSVLDA 403
RA+L DLEP + +++G ++ +N GAG NWA G Y G + ++D
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 404 XRKES 418
+E+
Sbjct: 122 IDREA 126
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 87.4 bits (207), Expect = 9e-18
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYVP 229
REI+ LQ GQCGNQIG + W+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 230 RAILXDLEPGTXDSVRSGPXXQIFRPDN-FVFXQ-SGAGINWAXGHYTXGAELXXSVLDA 403
RA+L DLEP + +++G ++ +N FV GAG NWA G Y G + ++D
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 404 XRKES 418
+E+
Sbjct: 122 IDREA 126
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 95 GAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYVP 229
G + W I+ + TG Y DL ER+++ +++A +Y P
Sbjct: 45 GPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKP 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,693,024
Number of Sequences: 28952
Number of extensions: 158463
Number of successful extensions: 279
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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