Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0027
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 115 6e-27
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 56 5e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 46 3e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 40 3e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.097
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.097
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.52
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.69
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.6
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.8
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 6.4
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 8.5
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 8.5
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 115 bits (276), Expect = 6e-27
Identities = 59/149 (39%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 295
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 296 TGHIARECAQSPDE---PSCYNCNKTGHIXRNC-----PEGGR---EXATQTCYNCNKXG 442
GH+ R+C SP+ CY C + GHI R+C GGR + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 443 HIXRNCXDGXKTCYVCGKPGHIXRECDEA 529
H R+C G K CY CGK GH EC +A
Sbjct: 126 HQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Frame = +2
Query: 203 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRN 382
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 383 CPEGGREXATQTCYNCNKXGHIXRNCXDGXK-------------TCYVCGKPGHIXREC 520
CP CY C + GHI R+C + CY CG GH R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 96.7 bits (230), Expect = 2e-21
Identities = 52/153 (33%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRC 280
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 281 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIXRNCPEGGREXATQTCYN 427
Y+C GHIAR+C + + +CY C GH R+C G + CY+
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYS 139
Query: 428 CNKXGHIXRNCXDG--XKTCYVCGKPGHIXREC 520
C K GH C + CY C +PGHI C
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 91.5 bits (217), Expect = 9e-20
Identities = 42/99 (42%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +2
Query: 92 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 268
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 269 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNC 385
+CY C GH + EC Q+ D CY CN+ GHI NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 68.5 bits (160), Expect = 7e-13
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 338 PSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGX--KTCYVCGKPGHIX 511
P CYNC + GH R C +G CYNCN+ GH C + KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 512 RECDEARN 535
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 31.9 bits (69), Expect = 0.074
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 104 AMSSSVCYKCNRTGHFARECT 166
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 55.6 bits (128), Expect = 5e-09
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +2
Query: 203 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 364
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 365 GHIXRNCPEG--GREXATQTCYNCNKXGHIXRNC 460
GH+ C + G C C+ H+ ++C
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 289
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 290 NGTGHIARECAQSPD--EPS---CYNCNKTGHIXRNCPEGGRE 403
+ GH++ +C Q+P P C C+ H+ ++C + ++
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKD 172
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 311 RECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXD----GXKT 478
R Q + C+ C + GHI ++CPE + C+ C H C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 479 CYVCGKPGHIXRECDE 526
C++C + GH+ +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 116 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 274
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 275 RCYRCNGTGHIARECAQ 325
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 92 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 265
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 29.1 bits (62), Expect = 0.52
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 473 KTCYVCGKPGHIXRECDEARN 535
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 46.4 bits (105), Expect = 3e-06
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Frame = +2
Query: 230 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIXRNCPEGGREX 406
+R +F D E+ C+ C G GHI+++C C C HI CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 407 ATQTCYNCNKXGHIXRNCXD----GXKTCYVCGKPGHIXREC 520
T+ C NC GHI C + G + C C H C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGGREXATQTCYNCNK-XGHIXRNCXDGXKTCYVCGKPGHIXREC 520
C+NC GHI ++CP C C HI C K C CG GHI C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRC-PWTKKCMNCGLLGHIAARC 140
Query: 521 DEAR 532
E R
Sbjct: 141 SEPR 144
Score = 39.9 bits (89), Expect = 3e-04
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Frame = +2
Query: 113 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 274
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 275 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXR 454
R R T H + + Y K + + E + CYNC H
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGD 200
Query: 455 NC 460
+C
Sbjct: 201 DC 202
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 39.9 bits (89), Expect = 3e-04
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNC 460
C NC GH +CPE C +C GHI R+C
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 340
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = +2
Query: 398 REXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXREC 520
R+ Q C NC GH +C + C CG GHI R+C
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
Score = 33.5 bits (73), Expect = 0.024
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCP 388
+E C C GH +C + + C +C GHI R+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 259
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.5 bits (68), Expect = 0.097
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 443 HIXRNCXDGXKTCYVCGKPGHIXREC 520
H + C TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 116 SVCYKCNRTGHFAREC 163
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 242 HFARDCKEEADRCYRCNGTGHIAREC 319
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 218 CFKCNRTGHFARDCK 262
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.5 bits (68), Expect = 0.097
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 443 HIXRNCXDGXKTCYVCGKPGHIXREC 520
H + C TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 116 SVCYKCNRTGHFAREC 163
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 242 HFARDCKEEADRCYRCNGTGHIAREC 319
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 218 CFKCNRTGHFARDCK 262
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 395 GREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKP 499
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 323 QSPDEPSCYNCNKTGHIXRN--CPEGGR 400
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 98 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 253
P A +V K N GH E G V +S + K + +R G F+R
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSR 435
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 200 NRQREKCFKCNRTGHFARDCKEEA 271
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 343
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 311 RECAQSPDEPS-----CYNCNKTGHIXRNCP 388
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 6.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 119 VCYKCNRTGHFAREC 163
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 210 VRSASSATAQDTLRGIARKRLTVA 281
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Frame = +2
Query: 380 NCPEGGREXATQTCYN----CNKXGHI 448
+CP+G E T C+N C G+I
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYI 92
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 197 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 295
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,630
Number of Sequences: 5004
Number of extensions: 32324
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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