Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0027
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 96 2e-20
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 67 1e-11
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 67 1e-11
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 65 4e-11
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 65 4e-11
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 65 4e-11
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 64 1e-10
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 64 1e-10
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 64 1e-10
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 60 1e-09
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 42 4e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 42 4e-04
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 38 0.004
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 38 0.004
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 38 0.004
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 35 0.039
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 35 0.039
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 35 0.039
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 35 0.039
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 35 0.039
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 35 0.039
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 35 0.039
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 35 0.051
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 33 0.12
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 32 0.36
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 30 1.5
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 1.5
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 1.9
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 3.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 3.3
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 3.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 3.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.3
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 27 7.7
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 27 7.7
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 95.9 bits (228), Expect = 2e-20
Identities = 55/159 (34%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Frame = +2
Query: 107 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD---- 274
MS CYKC + GH +R C G G C+ C TGHF+RDC +
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRG-GGGGSTCYNCQETGHFSRDCPKGGSGGGQ 59
Query: 275 --------RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNC 430
CY C G GH +R+C PS + +G E GR Q CYNC
Sbjct: 60 RGGGGGGGSCYNCGGRGHYSRDC------PSARSEGGSGGYGGRGGE-GRSFGGQKCYNC 112
Query: 431 NKXGHIXRNCXDG----XKTCYVCGKPGHIXRECDEARN 535
+ GHI R C + K CY C + GHI R+C N
Sbjct: 113 GRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 74.5 bits (175), Expect = 5e-14
Identities = 44/132 (33%), Positives = 59/132 (44%), Gaps = 37/132 (28%)
Frame = +2
Query: 269 ADR-CYRCNGTGHIARECAQSPDE---------PSCYNCNKTGHIXRNCPEGGREXATQ- 415
+DR CY+C GHI+R C + +CYNC +TGH R+CP+GG +
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRG 61
Query: 416 ------TCYNCNKXGHIXRNCXD--------------------GXKTCYVCGKPGHIXRE 517
+CYNC GH R+C G + CY CG+ GHI RE
Sbjct: 62 GGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRE 121
Query: 518 CDEARN*PEAPC 553
C E+ + E C
Sbjct: 122 CTESGSAEEKRC 133
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 292
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 293 GTGHIARECAQSPDEP--SCYNCNKTGHIXRNCP-EGGREXATQTCYNCNKXGHIXRNC 460
GH A +C Q P P C NC + GH ++C E R T+ C C + GH C
Sbjct: 623 IEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Frame = +2
Query: 230 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIXRNCPEGGRE 403
N+ G++ D E C+ C GHI++EC P P C NC + GH +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ--PR 612
Query: 404 XATQTCYNCNKXGHIXRNCXDGXKT----CYVCGKPGHIXREC--DEARN*PEAPC 553
C NC GH +C D K C CG+ GH ++C + R P PC
Sbjct: 613 VPRGPCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 283
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 284 RCNGTGHIARECAQSPDE 337
RC GH EC P +
Sbjct: 669 RCAEEGHWGYECPTRPKD 686
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 292
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 293 GTGHIARECAQSPDEP--SCYNCNKTGHIXRNCP-EGGREXATQTCYNCNKXGHIXRNC 460
GH A +C Q P P C NC + GH ++C E R T+ C C + GH C
Sbjct: 623 IEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Frame = +2
Query: 230 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIXRNCPEGGRE 403
N+ G++ D E C+ C GHI++EC P P C NC + GH +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ--PR 612
Query: 404 XATQTCYNCNKXGHIXRNCXDGXKT----CYVCGKPGHIXREC--DEARN*PEAPC 553
C NC GH +C D K C CG+ GH ++C + R P PC
Sbjct: 613 VPRGPCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 283
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 284 RCNGTGHIARECAQSPDE 337
RC GH EC P +
Sbjct: 669 RCAEEGHWGYECPTRPKD 686
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Frame = +2
Query: 194 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDEPSCYN 352
G + CF C + GH + DC KE R CY C GH +REC + P E
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211
Query: 353 CNKTGHIXRNCPE----------GGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPG 502
N GG E C+NC GH C + + C+ CG+ G
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQG 271
Query: 503 HIXREC 520
H EC
Sbjct: 272 HRSNEC 277
Score = 47.2 bits (107), Expect = 9e-06
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 27/101 (26%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ-------------GGV----------VSRDSGFNRQRE----K 217
VCY C + GH +RECT+ GG D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 340
CF C GH + +C E C+ C GH + EC +P +P
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-RCYRCNGT 298
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 299 GHIARECAQSPDEP----------------SCYNCNKTGHIXRNCPEGGREXATQTCYNC 430
G A ++ C+NC GH CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNC 267
Query: 431 NKXGHIXRNCXDGXK 475
+ GH C + K
Sbjct: 268 GEQGHRSNECPNPAK 282
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 392 GGREXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
GG E C+NC + GH +C + K CY C +PGH REC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Frame = +2
Query: 194 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDEPSCYN 352
G + CF C + GH + DC KE R CY C GH +REC + P E
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211
Query: 353 CNKTGHIXRNCPE----------GGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPG 502
N GG E C+NC GH C + + C+ CG+ G
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQG 271
Query: 503 HIXREC 520
H EC
Sbjct: 272 HRSNEC 277
Score = 47.2 bits (107), Expect = 9e-06
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 27/101 (26%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ-------------GGV----------VSRDSGFNRQRE----K 217
VCY C + GH +RECT+ GG D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 340
CF C GH + +C E C+ C GH + EC +P +P
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-RCYRCNGT 298
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 299 GHIARECAQSPDEP----------------SCYNCNKTGHIXRNCPEGGREXATQTCYNC 430
G A ++ C+NC GH CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNC 267
Query: 431 NKXGHIXRNCXDGXK 475
+ GH C + K
Sbjct: 268 GEQGHRSNECPNPAK 282
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 392 GGREXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
GG E C+NC + GH +C + K CY C +PGH REC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Frame = +2
Query: 194 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDEPSCYN 352
G + CF C + GH + DC KE R CY C GH +REC + P E
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211
Query: 353 CNKTGHIXRNCPE----------GGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPG 502
N GG E C+NC GH C + + C+ CG+ G
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQG 271
Query: 503 HIXREC 520
H EC
Sbjct: 272 HRSNEC 277
Score = 47.2 bits (107), Expect = 9e-06
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 27/101 (26%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ-------------GGV----------VSRDSGFNRQRE----K 217
VCY C + GH +RECT+ GG D GF E K
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMK 243
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 340
CF C GH + +C E C+ C GH + EC +P +P
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-RCYRCNGT 298
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 299 GHIARECAQSPDEP----------------SCYNCNKTGHIXRNCPEGGREXATQTCYNC 430
G A ++ C+NC GH CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNC 267
Query: 431 NKXGHIXRNCXDGXK 475
+ GH C + K
Sbjct: 268 GEQGHRSNECPNPAK 282
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 392 GGREXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
GG E C+NC + GH +C + K CY C +PGH REC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCY 349
+ CF C + GH + DC KE R CY C GH +R+C + P E S +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 350 NCNKTGHIXRNCPEG---GREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
G EG E C+NC GH C + + C+ CG+ GH EC
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQG-----GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 283
VCY C + GH +R+C + G SGF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 284 RCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCP 388
C G GH + EC + P C+NC + GH CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ--------GGVVSRDSGF--NRQREKCFKCNRTGHFARDCKEE 268
VCY C + GH +R+C + G SGF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 269 A---DRCYRCNGTGHIARECAQSPDE--PSCYNCNKTGHIXRNCPEGGREXATQTCYNCN 433
+ + N G + Q E +C+NC + GH +CPE +E + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 434 KXGHIXRNCXDGXK 475
+ GH R+C + K
Sbjct: 403 QPGHNSRDCPEERK 416
Score = 52.4 bits (120), Expect = 2e-07
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
+C+NC + GH +CPE +E + CYNC + GH R+C + K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 49.6 bits (113), Expect = 2e-06
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 295
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 311
Query: 296 -------------TGH---IARECAQSPDEPSCYNCNKTGHIXRNCPEGG----REXATQ 415
TG + + S + G GG R
Sbjct: 312 GGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNN 371
Query: 416 TCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
C+NC + GH +C + K CY C +PGH R+C E R
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Frame = +2
Query: 236 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCPE----- 391
+G +D E + C+ C GH + +C + E CYNC + GH R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 418
Query: 392 GGREXATQTCYNCNKXGH-------IXRNCXDGXKTCYVCGKPGHIXRECDE 526
GR T N G N G C+ C GH EC E
Sbjct: 419 EGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 49.2 bits (112), Expect = 2e-06
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT- 298
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 299 ------------GHIARECAQSPDEP--SCYNCNKTGHIXRNCPEGGREXATQTCYNCNK 436
G A + + C+NC GH CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Query: 437 XGHIXRNCXDGXK 475
GH C + K
Sbjct: 481 QGHRSNECPNPAK 493
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 236 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCPE 391
+G +D E + C+ C GH + +C + E CYNC + GH R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 398 REXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
R C+NC + GH +C + K CY C +PGH R+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 325
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCY 349
+ CF C + GH + DC KE R CY C GH +R+C + P E S +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 350 NCNKTGHIXRNCPEG---GREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
G EG E C+NC GH C + + C+ CG+ GH EC
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQG-----GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 283
VCY C + GH +R+C + G SGF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 284 RCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCP 388
C G GH + EC + P C+NC + GH CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ--------GGVVSRDSGF--NRQREKCFKCNRTGHFARDCKEE 268
VCY C + GH +R+C + G SGF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 269 A---DRCYRCNGTGHIARECAQSPDE--PSCYNCNKTGHIXRNCPEGGREXATQTCYNCN 433
+ + N G + Q E +C+NC + GH +CPE +E + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 434 KXGHIXRNCXDGXK 475
+ GH R+C + K
Sbjct: 403 QPGHNSRDCPEERK 416
Score = 52.4 bits (120), Expect = 2e-07
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
+C+NC + GH +CPE +E + CYNC + GH R+C + K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 49.6 bits (113), Expect = 2e-06
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 295
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 311
Query: 296 -------------TGH---IARECAQSPDEPSCYNCNKTGHIXRNCPEGG----REXATQ 415
TG + + S + G GG R
Sbjct: 312 GGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNN 371
Query: 416 TCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
C+NC + GH +C + K CY C +PGH R+C E R
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Frame = +2
Query: 236 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCPE----- 391
+G +D E + C+ C GH + +C + E CYNC + GH R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 418
Query: 392 GGREXATQTCYNCNKXGH-------IXRNCXDGXKTCYVCGKPGHIXRECDE 526
GR T N G N G C+ C GH EC E
Sbjct: 419 EGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 49.2 bits (112), Expect = 2e-06
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT- 298
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 299 ------------GHIARECAQSPDEP--SCYNCNKTGHIXRNCPEGGREXATQTCYNCNK 436
G A + + C+NC GH CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Query: 437 XGHIXRNCXDGXK 475
GH C + K
Sbjct: 481 QGHRSNECPNPAK 493
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 236 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCPE 391
+G +D E + C+ C GH + +C + E CYNC + GH R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 398 REXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
R C+NC + GH +C + K CY C +PGH R+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 325
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCY 349
+ CF C + GH + DC KE R CY C GH +R+C + P E S +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 350 NCNKTGHIXRNCPEG---GREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
G EG E C+NC GH C + + C+ CG+ GH EC
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQG-----GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 283
VCY C + GH +R+C + G SGF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 284 RCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCP 388
C G GH + EC + P C+NC + GH CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Frame = +2
Query: 119 VCYKCNRTGHFARECTQ--------GGVVSRDSGF--NRQREKCFKCNRTGHFARDCKEE 268
VCY C + GH +R+C + G SGF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 269 A---DRCYRCNGTGHIARECAQSPDE--PSCYNCNKTGHIXRNCPEGGREXATQTCYNCN 433
+ + N G + Q E +C+NC + GH +CPE +E + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 434 KXGHIXRNCXDGXK 475
+ GH R+C + K
Sbjct: 403 QPGHNSRDCPEERK 416
Score = 52.4 bits (120), Expect = 2e-07
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
+C+NC + GH +CPE +E + CYNC + GH R+C + K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 49.6 bits (113), Expect = 2e-06
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 295
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 311
Query: 296 -------------TGH---IARECAQSPDEPSCYNCNKTGHIXRNCPEGG----REXATQ 415
TG + + S + G GG R
Sbjct: 312 GGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNN 371
Query: 416 TCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
C+NC + GH +C + K CY C +PGH R+C E R
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Frame = +2
Query: 236 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCPE----- 391
+G +D E + C+ C GH + +C + E CYNC + GH R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 418
Query: 392 GGREXATQTCYNCNKXGH-------IXRNCXDGXKTCYVCGKPGHIXRECDE 526
GR T N G N G C+ C GH EC E
Sbjct: 419 EGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 49.2 bits (112), Expect = 2e-06
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT- 298
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 299 ------------GHIARECAQSPDEP--SCYNCNKTGHIXRNCPEGGREXATQTCYNCNK 436
G A + + C+NC GH CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG-----CFNCGE 480
Query: 437 XGHIXRNCXDGXK 475
GH C + K
Sbjct: 481 QGHRSNECPNPAK 493
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 236 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIXRNCPE 391
+G +D E + C+ C GH + +C + E CYNC + GH R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 398 REXATQTCYNCNKXGHIXRNCXDGXK-----TCYVCGKPGHIXRECDEAR 532
R C+NC + GH +C + K CY C +PGH R+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 206 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 325
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Frame = +2
Query: 107 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR--- 277
++ S C+ C GH +C + S D CFKC H +CK++ +
Sbjct: 226 ITGSACFHCREPGHRLADCPKRNSSSSDG-------VCFKCGSMEHSIHECKKKGVKGFP 278
Query: 278 ---CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIXRNCPE 391
C+ C GHI+R+C Q+ PD C C H+ R+CPE
Sbjct: 279 YATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGANTHLRRDCPE 324
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Frame = +2
Query: 170 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQ---SPDEP 340
G V D+ +R K + R G +D K C+ C GH +C + S +
Sbjct: 197 GKVTVADAMLLVKRWKTRETRRIGR--QDQKITGSACFHCREPGHRLADCPKRNSSSSDG 254
Query: 341 SCYNCNKTGHIXRNCPEGG-REXATQTCYNCNKXGHIXRNCXDGXK-------TCYVCGK 496
C+ C H C + G + TC+ C + GHI R+C C VCG
Sbjct: 255 VCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGA 314
Query: 497 PGHIXRECDE 526
H+ R+C E
Sbjct: 315 NTHLRRDCPE 324
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNC-XDGXK-----TCYVCGKPG 502
+C++C + GH +CP+ + C+ C H C G K TC+VC + G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 503 HIXRECDEARN 535
HI R+C + N
Sbjct: 290 HISRDCHQNVN 300
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 41.5 bits (93), Expect = 4e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 410 TQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
+ TC+NC K GH C + C CG P H EC
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANEC 237
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 322
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNC 385
++ C+ C GH A EC S + C NC H C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
+C+NC K GH C RE C NC H C K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 259
S+ C+ C + GH A EC+ QRE C C H A +C
Sbjct: 201 SNTCFNCKKYGHRATECSA-----------PQRE-CANCGDPNHRANEC 237
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 41.5 bits (93), Expect = 4e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 410 TQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXREC 520
+ TC+NC K GH C + C CG P H EC
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANEC 237
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 322
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNC 385
++ C+ C GH A EC S + C NC H C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDGXK 475
+C+NC K GH C RE C NC H C K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 259
S+ C+ C + GH A EC+ QRE C C H A +C
Sbjct: 201 SNTCFNCKKYGHRATECSA-----------PQRE-CANCGDPNHRANEC 237
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 289
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 628 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 680
Query: 290 NGTGHIARECAQSPDEPS 343
N GHIA C + + S
Sbjct: 681 NEMGHIAWNCPKKNENTS 698
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 212 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIX 376
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHI
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 687
Query: 377 RNCPE 391
NCP+
Sbjct: 688 WNCPK 692
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 323 QSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXD-GXKTCYVCGKP 499
Q+P + C +C + G C + ++ A+Q C C + G +C + C+ C +
Sbjct: 625 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 683
Query: 500 GHIXREC 520
GHI C
Sbjct: 684 GHIAWNC 690
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIXRNCPEGGREXATQTCYNCNKX 439
+DRC C G C++ S D S C C ++G +C + + C+ CN+
Sbjct: 628 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASC----FKLKNRACFRCNEM 683
Query: 440 GHIXRNC 460
GHI NC
Sbjct: 684 GHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 289
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 531 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 583
Query: 290 NGTGHIARECAQSPDEPS 343
N GHIA C + + S
Sbjct: 584 NEMGHIAWNCPKKNENTS 601
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 212 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIX 376
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHI
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 590
Query: 377 RNCPE 391
NCP+
Sbjct: 591 WNCPK 595
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 323 QSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXD-GXKTCYVCGKP 499
Q+P + C +C + G C + ++ A+Q C C + G +C + C+ C +
Sbjct: 528 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 586
Query: 500 GHIXREC 520
GHI C
Sbjct: 587 GHIAWNC 593
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIXRNCPEGGREXATQTCYNCNKX 439
+DRC C G C++ S D S C C ++G +C + + C+ CN+
Sbjct: 531 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASC----FKLKNRACFRCNEM 586
Query: 440 GHIXRNC 460
GHI NC
Sbjct: 587 GHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 289
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 542 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 594
Query: 290 NGTGHIARECAQSPDEPS 343
N GHIA C + + S
Sbjct: 595 NEMGHIAWNCPKKNENTS 612
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 212 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIX 376
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHI
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 601
Query: 377 RNCPE 391
NCP+
Sbjct: 602 WNCPK 606
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 323 QSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXD-GXKTCYVCGKP 499
Q+P + C +C + G C + ++ A+Q C C + G +C + C+ C +
Sbjct: 539 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 597
Query: 500 GHIXREC 520
GHI C
Sbjct: 598 GHIAWNC 604
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 269 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIXRNCPEGGREXATQTCYNCNKX 439
+DRC C G C++ S D S C C ++G +C + + C+ CN+
Sbjct: 542 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASC----FKLKNRACFRCNEM 597
Query: 440 GHIXRNC 460
GHI NC
Sbjct: 598 GHIAWNC 604
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPE-GGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXRE 517
+C+NC++ GH CP G+ Q ++ I TCY CG+ GH
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 518 C 520
C
Sbjct: 265 C 265
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = +2
Query: 248 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYN 427
A+ +A C+ C+ GH A C P + N + + + + + TCY
Sbjct: 196 AKPTYSQAITCHNCHERGHKATTCPHLPGQTR-QNQDHHHRVDLSLIPDKKNLSDVTCYK 254
Query: 428 CNKXGHIXRNCXDG 469
C + GH C G
Sbjct: 255 CGEKGHYANRCHKG 268
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIXRN 382
C C+ GH A C + R N H + + PD+ + CY C + GH
Sbjct: 206 CHNCHERGHKATTCPHLPGQT-RQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 383 CPEGGREXATQTCY 424
C +G + T +
Sbjct: 265 CHKGALAFLSNTAH 278
Score = 31.9 bits (69), Expect = 0.36
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Frame = +2
Query: 80 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR-------EK------- 217
A +KP + C+ C+ GH A C +R + + R +K
Sbjct: 192 AVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVT 251
Query: 218 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 316
C+KC GH+A C + A + N T H+A E
Sbjct: 252 CYKCGEKGHYANRCHKGA-LAFLSN-TAHLAHE 282
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 386 PEGGREXATQTCYNCNKXG-HIXRNCXD---GXKTCYVCGKPGHIXRECDEAR 532
P G ++ + C+ C K H ++C + K CY CG H+ C E R
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERR 154
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIXRNCPEGGRE 403
RC+RC H A+ C D CY C H+ CPE R+
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 156
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 215 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 325
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 152
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 386 PEGGREXATQTCYNCNKXG-HIXRNCXD---GXKTCYVCGKPGHIXRECDEAR 532
P G ++ + C+ C K H ++C + K CY CG H+ C E R
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERR 185
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIXRNCPEGGRE 403
RC+RC H A+ C D CY C H+ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 215 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 325
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 386 PEGGREXATQTCYNCNKXG-HIXRNCXD---GXKTCYVCGKPGHIXRECDEAR 532
P G ++ + C+ C K H ++C + K CY CG H+ C E R
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERR 185
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIXRNCPEGGRE 403
RC+RC H A+ C D CY C H+ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 215 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 325
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.039
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 386 PEGGREXATQTCYNCNKXG-HIXRNCXD---GXKTCYVCGKPGHIXRECDEAR 532
P G ++ + C+ C K H ++C + K CY CG H+ C E R
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERR 185
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 275 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIXRNCPEGGRE 403
RC+RC H A+ C D CY C H+ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 215 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 325
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 239 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIXRNC--PEG 394
G F + RC C H + EC +P ++ C NC GHI ++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNC 460
C NC H CP+ C NC GHI ++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 262
C C H + EC V+ KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQI-------KCTNCGAFGHISKDCK 469
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Frame = +2
Query: 419 CYNCNKXGHIXRNCXDGXKT-----CYVCGKPGHIXREC 520
C NC H C D C CG GHI ++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 239 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIXRNC--PEG 394
G F + RC C H + EC +P ++ C NC GHI ++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNC 460
C NC H CP+ C NC GHI ++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 262
C C H + EC V+ KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQI-------KCTNCGAFGHISKDCK 469
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Frame = +2
Query: 419 CYNCNKXGHIXRNCXDGXKT-----CYVCGKPGHIXREC 520
C NC H C D C CG GHI ++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 278 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXG 442
CY+C GH++++C QS N KT H N E G T N G
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLNVEG 366
Score = 30.3 bits (65), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 338 PSCYNCNKTGHIXRNCPE 391
P CY C GH+ ++CP+
Sbjct: 311 PYCYKCKVVGHVSKDCPQ 328
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGF-NRQRE 214
CYKC GH +++C Q S +SG NR+ E
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTE 341
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 34.7 bits (76), Expect = 0.051
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 341 SCYNCNKTGHIXRNCPEG 394
+CY C + GHI RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 107 MSSSVCYKCNRTGHFARECTQG 172
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 31.9 bits (69), Expect = 0.36
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 413 QTCYNCNKXGHIXRNCXDG 469
+ CY C + GHI RNC +G
Sbjct: 4 RNCYKCQQPGHISRNCPNG 22
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 473 KTCYVCGKPGHIXREC 520
+ CY C +PGHI R C
Sbjct: 4 RNCYKCQQPGHISRNC 19
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 218 CFKCNRTGHFARDCKE-EADRCYRCNGTGHI 307
C+KC + GH +R+C E+D R G G +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGGV 36
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 269 ADR-CYRCNGTGHIAREC 319
+DR CY+C GHI+R C
Sbjct: 2 SDRNCYKCQQPGHISRNC 19
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 33.5 bits (73), Expect = 0.12
Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Frame = +2
Query: 155 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 334
R C Q + + GF K C+ G DC +++ +C C G R+C Q
Sbjct: 825 RRCDQCAIGTY--GFGPSGCKKCDCDAVGSLGNDCDKQSGQCV-CREKGIYGRQCNQCQP 881
Query: 335 E----PSCYNCNKTGHIXRNCPEGGREXATQTCYNCN--KXGHIXRNCXDG 469
P C C H C + ++ C C GH C DG
Sbjct: 882 GFWGFPECRTCQCNDH-ANIC-----DQSSGACIECRDLTTGHYCDRCQDG 926
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +2
Query: 116 SVCYKCNRTGHFAR--ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 289
S C C+ T H R EC R+ CF C R+GH C C C
Sbjct: 312 SPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSRPR-TCNHC 370
Query: 290 NGTGH 304
G H
Sbjct: 371 KGNHH 375
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 305 IARECAQ--SPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNKXGHIXRNCXDG 469
+ R+C Q +P + C+ C++ GH +CP+ + + N R+ G
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSG 1398
Score = 31.5 bits (68), Expect = 0.48
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +2
Query: 155 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 334
R+C QG + +RQ C +C+R GHF C + A AR+ S
Sbjct: 1344 RKCNQGSAPT-----DRQ---CHQCHRIGHFVESCPQRA--------LAKEARKRFGSNS 1387
Query: 335 EPSCYNCNKTGHIXRNCPEGG 397
S Y N +G +N EGG
Sbjct: 1388 TNSSYRSNDSGRGFKNGEEGG 1408
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVV--SRDSGFNRQREKCFKCNRTGHFARDCKEEADR 277
C++C+R GHF C Q + +R + ++ N +G ++ +E DR
Sbjct: 1357 CHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFKNGEEGGDR 1410
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = -2
Query: 407 RTPAPPRDSSVRCG-PSCCSCNTTARPGSVRTRALCAPCRYICSNGQPLPCNPSQSVLCG 231
+T P CG P C C V T C C+ +C+N C CG
Sbjct: 76 QTCCPSAPPPCSCGTPGCMQCVQQTVLVPVTTTTCCKCCQPVCTNA----CTNGGGCSCG 131
Query: 230 CT 225
CT
Sbjct: 132 CT 133
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Frame = -2
Query: 398 APPRDSSVRCGPSC---CS--CNTTARPGSVRTRALCAPCRYICSNGQPLPCNPSQSVLC 234
A P+ S +C P C C C T A C C+ + C P Q+ C
Sbjct: 253 ASPQTS--QCVPQCQQQCQQQCQTRTTASQQCAPACSTSCNQSCNQPAQMACQPMQNSQC 310
Query: 233 GC 228
GC
Sbjct: 311 GC 312
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 229
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 203 RQREKCFKCNRTGHFARDCKEEA 271
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +2
Query: 113 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 277
+ +C +C + G C+ + + R +CF C GH + C + DR
Sbjct: 578 NGICAECKQVGGHEPSCS---LAPKTWKRERPPPQCFTCGEMGHISTYCPKRIDR 629
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Frame = +2
Query: 278 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIXRNCPE 391
C C G C+ +P P C+ C + GHI CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 248 ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGH----IXRNCPE 391
A+ C+ D + Y+ GH R+C D P Y C K G I +NCP+
Sbjct: 37 AKKCENYFDCQQYQTCIFGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 263 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 370
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 140 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 304
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 305 IARECAQSPDEPSCYNC--NKTGHIXRNCPEG--GREXATQTCYNC 430
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 140 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 304
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 305 IARECAQSPDEPSCYNC--NKTGHIXRNCPEG--GREXATQTCYNC 430
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Frame = +2
Query: 251 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN-KTGHIXRNCPEGGREXATQTCYN 427
RD E A C+G H C D Y C G+I N E GR C
Sbjct: 2743 RDVDECALGLNNCSGVAH----CI---DRAVGYTCKCPDGYIDGNPDEPGRVCGALLCDL 2795
Query: 428 CNKXGHIXRNCXDGXKTCYVC 490
CN G N TC VC
Sbjct: 2796 CNAHGDCVHNTATNNITC-VC 2815
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Frame = +2
Query: 251 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN-KTGHIXRNCPEGGREXATQTCYN 427
RD E A C+G H C D Y C G+I N E GR C
Sbjct: 3327 RDVDECALGLNNCSGVAH----CI---DRAVGYTCKCPDGYIDGNPDEPGRVCGALLCDL 3379
Query: 428 CNKXGHIXRNCXDGXKTCYVC 490
CN G N TC VC
Sbjct: 3380 CNAHGDCVHNTATNNITC-VC 3399
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Frame = +2
Query: 251 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN-KTGHIXRNCPEGGREXATQTCYN 427
RD E A C+G H C D Y C G+I N E GR C
Sbjct: 2743 RDVDECALGLNNCSGVAH----CI---DRAVGYTCKCPDGYIDGNPDEPGRVCGALLCDL 2795
Query: 428 CNKXGHIXRNCXDGXKTCYVC 490
CN G N TC VC
Sbjct: 2796 CNAHGDCVHNTATNNITC-VC 2815
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Frame = +2
Query: 251 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN-KTGHIXRNCPEGGREXATQTCYN 427
RD E A C+G H C D Y C G+I N E GR C
Sbjct: 3327 RDVDECALGLNNCSGVAH----CI---DRAVGYTCKCPDGYIDGNPDEPGRVCGALLCDL 3379
Query: 428 CNKXGHIXRNCXDGXKTCYVC 490
CN G N TC VC
Sbjct: 3380 CNAHGDCVHNTATNNITC-VC 3399
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 296 CRYICSNGQPLPCNPSQSVLCGC 228
CR C G PCN + SV+C C
Sbjct: 509 CREKCHEGPCPPCNLNTSVICRC 531
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 122 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN-GT 298
CY C + GH A EC + D N +R+ + + R + D Y + T
Sbjct: 411 CYYCGKRGHTANECRR---KKSDESQNGERQDPSQSEQIAALRRQLAMQNDDPYSSDEST 467
Query: 299 GHIARECAQSPDEPS 343
++ C + ++P+
Sbjct: 468 EALSLSCQKPKEDPT 482
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 479 CYVCGKPGHIXREC 520
CY CGK GH EC
Sbjct: 411 CYYCGKRGHTANEC 424
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Frame = +2
Query: 251 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN-KTGHIXRNCPEGGREXATQTCYN 427
RD E A C+G H C D Y C G+I N E GR C
Sbjct: 3327 RDVDECALGLNNCSGVAH----CI---DRAVGYTCKCPDGYIDGNPDEPGRVCGALLCDL 3379
Query: 428 CNKXGHIXRNCXDGXKTCYVC 490
CN G N TC VC
Sbjct: 3380 CNAHGDCVHNTATNNITC-VC 3399
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 140 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 304
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 305 IARECAQSPDEPSCYNC--NKTGHIXRNCPEG--GREXATQTCYNC 430
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 140 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 304
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 305 IARECAQSPDEPSCYNC--NKTGHIXRNCPEG--GREXATQTCYNC 430
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/50 (26%), Positives = 17/50 (34%)
Frame = +2
Query: 287 CNGTGHIARECAQSPDEPSCYNCNKTGHIXRNCPEGGREXATQTCYNCNK 436
C I A +P E C NK + R C G + C+K
Sbjct: 77 CQSACGIPHVLASNPTEEVCEKWNKCDDVKRQCAAAGGNYYAGANFQCSK 126
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 344 CYNCNKTGHIXRNCPE 391
C++C + GHI R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 383 CPEGGREXATQTCYNCNKXGHIXRNCXDGXKTCYVCGKPGHIXRECDEARN 535
CP ++ QTC + R C + + C +C P HI C A++
Sbjct: 925 CPPCKKDHPLQTC--TMGAIEVKRFCINNGR-CTICSSPSHITGNCSYAQS 972
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,774
Number of Sequences: 27780
Number of extensions: 232730
Number of successful extensions: 1252
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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