Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0026
         (337 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DPJ7 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  

>UniRef50_A3DPJ7 Cluster: Putative uncharacterized protein; n=1;
           Staphylothermus marinus F1|Rep: Putative uncharacterized
           protein - Staphylothermus marinus (strain ATCC 43588 /
           DSM 3639 / F1)
          Length = 450

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 191 IIKTIYKIRTSYHTT*VSVVLMIGRVSFYYNL 96
           +I ++    TSY T  +S+++MIG + F+YN+
Sbjct: 204 LIFSLLMYSTSYCTDVISILIMIGYIIFFYNI 235


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,802,358
Number of Sequences: 1657284
Number of extensions: 2718849
Number of successful extensions: 6372
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6371
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)