Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0026
         (337 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   4.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    20   6.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    20   8.0  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 168 NFVNSFNNSITKLKIAMLILLIR 236
           NFVN +  +I  L I    +LIR
Sbjct: 166 NFVNEYVQAIEVLYICSYTVLIR 188


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 271 LYNCHHLCIKLYLINK 224
           LYNC H  + L ++++
Sbjct: 145 LYNCFHSTLLLMILSR 160


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 286 GSYFILYNCH 257
           G++ ++YNCH
Sbjct: 101 GNHQLVYNCH 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,403
Number of Sequences: 336
Number of extensions: 791
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)