Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0026
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   0.77 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    24   7.1  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   9.4  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    23   9.4  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 203 FSNTIIKTIYKIRTSYHTT*VSVVLMIGRVSFYYNLTK 90
           F+N   KT+YKI T    +  SV   + RV  +YNL K
Sbjct: 250 FTNIFRKTVYKIPTDNDDSRDSVAYALQRV--FYNLEK 285


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 114 NTADH*DDTDLRSMIRCSNFVNSFNNSITKLKIAMLIL 227
           N  ++ + +D RS + CSN V    + IT ++   LIL
Sbjct: 713 NKGNNSNPSDSRSKVLCSNMVIILVSKITGVQSPPLIL 750


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 45  QGLV*TRTRKTAKF*FRQVIVKRNTADH*DDTDLRSMIRCSNFVNS 182
           Q LV  R  KTAK    + ++KR    H   +D+    R SN  NS
Sbjct: 29  QRLVFGRKHKTAKLEAPRALIKRKQLSHSTSSDI---TRHSNAKNS 71


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  ENVPLFVDLSGVSIDKDKENSKVL 88
           + +PL   ++GVS+D ++E    L
Sbjct: 56  DGIPLLPSMAGVSMDPEREKKSEL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,755
Number of Sequences: 5004
Number of extensions: 12933
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)