Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0026
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0292 - 17358129-17358213,17358462-17358541,17358627-173587...    28   2.2  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    26   8.7  

>02_03_0292 -
           17358129-17358213,17358462-17358541,17358627-17358797,
           17359440-17359541,17360216-17360365,17360549-17360671,
           17360781-17360867,17361209-17361289,17362071-17362210,
           17363490-17363534,17365315-17365485,17365784-17365805
          Length = 418

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 2   AAEGSENVPLFVDLSGVSIDKDKENSKVLISSGY---SKTKHGRSL 130
           AA+ S + PL   + G SID + E +K+L+S G    S + HG  L
Sbjct: 60  AADDSGDTPLAYAVRGRSIDGECEIAKILLSRGAHVDSFSSHGTPL 105


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 274 ILYNCHHLCIKLYLINKISIAIFNLVILLLKLFTKFEHLIILRK 143
           +L NC  L I+      + I I + + + +   TK+ H +I+R+
Sbjct: 499 LLINCETLEIQADYTRYLDITIISTITVKMHSSTKYMHSLIVRR 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,310,796
Number of Sequences: 37544
Number of extensions: 63439
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)