Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0026
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2) ...    29   0.58 

>At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2)
           nearly identical to receptor-like serine/threonine
           kinase GI:2465925 from [Arabidopsis thaliana];  intron 3
           was added to circumvent a frameshift.  Either a
           sequencing error exists or this may be a pseudogene.
          Length = 600

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 114 NTADH*DDTDLRSMIRCSNFVNSFNNSITKLKIAMLILLI 233
           + A+H  D D R+ IR S F +  +  +T+L IA + L I
Sbjct: 240 DAAEHKPDADQRNFIRSSFFPHLSDRDVTRLAIAAISLSI 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,605,536
Number of Sequences: 28952
Number of extensions: 58790
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)