Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0021
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.28 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.28 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 694 VMSSSQAVSYFEDISCLSRSFTKPLSVSP 608
           ++ ++ A+S+   ISC+SRS +  LS+ P
Sbjct: 534 ILVANVAISFGYLISCVSRSVSMALSIGP 562


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 694 VMSSSQAVSYFEDISCLSRSFTKPLSVSP 608
           ++ ++ A+S+   ISC+SRS +  LS+ P
Sbjct: 534 ILVANVAISFGYLISCVSRSVSMALSIGP 562


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 389 RHQRYAARISVYGEGSRRARR 451
           +HQ Y A + V   G RRA R
Sbjct: 26  QHQHYGAAVQVPQGGRRRAAR 46


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 187 SPRSESMSHKETLAPCFNN-SSLYAKPMPEAAPV 89
           SP+ +S      + P  +N SSL   P P A+P+
Sbjct: 242 SPQMQSYRPTGNITPHGSNTSSLITTPSPSASPL 275


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 148 APCFNNSSLYAKPMPEAAPVINATFP 71
           AP  N S  Y  P P  AP+     P
Sbjct: 408 APIPNVSPHYVTPTPPEAPLFQNVLP 433


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,847
Number of Sequences: 336
Number of extensions: 3771
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)