Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0021
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 117 9e-27
SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23) 77 2e-14
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 67 1e-11
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34) 67 2e-11
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32) 67 2e-11
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34) 65 5e-11
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 63 2e-10
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_44870| Best HMM Match : adh_short (HMM E-Value=5.4e-11) 55 5e-08
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 55 7e-08
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08) 54 1e-07
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 53 2e-07
SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11) 53 2e-07
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08) 53 3e-07
SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05) 53 3e-07
SB_35940| Best HMM Match : adh_short (HMM E-Value=0.00021) 53 3e-07
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 52 4e-07
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1) 52 7e-07
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 52 7e-07
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_33638| Best HMM Match : adh_short (HMM E-Value=0.0014) 46 3e-05
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 45 6e-05
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 44 2e-04
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 42 7e-04
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_19040| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08) 37 0.015
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_14258| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.081
SB_49030| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017) 31 1.00
SB_48033| Best HMM Match : ShTK (HMM E-Value=0.0056) 31 1.3
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 29 3.0
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3) 29 4.0
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 4.0
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 4.0
SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15) 29 4.0
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 29 5.3
SB_12716| Best HMM Match : E3_binding (HMM E-Value=9.7) 29 5.3
SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_14191| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20) 28 7.0
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14) 28 9.3
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3) 28 9.3
SB_33610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_27290| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 117 bits (282), Expect = 9e-27
Identities = 65/148 (43%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Frame = +3
Query: 60 MDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLF 239
M ++G VA++TG GIGLA S+ LL + KV + DI+ + G + + L+ Y + VLF
Sbjct: 1 MKIEGTVAIVTGGVQGIGLAISKALLDRDGKVCMLDINEKTGNETLKLLSENYSKHRVLF 60
Query: 240 CRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFM---NDRL----WELEVDVNLNGVIR 398
+ DVT PQ E AF T + F R+DI+ NNAG ND L W+ +D+N+ GVI
Sbjct: 61 IKCDVTSQPQMEAAFQRTKDVFGRLDILCNNAGIAVRENDLLRSGAWKTIIDINVKGVIL 120
Query: 399 GTLLAYRFMG-KDRGGQGGVIVNTASTA 479
GTLL MG G GG IVN AS A
Sbjct: 121 GTLLGLDHMGVSGAKGHGGTIVNVASLA 148
>SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)
Length = 228
Score = 77.0 bits (181), Expect = 2e-14
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Frame = +3
Query: 72 GKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLD 251
GK+ ITG ++G+GLA ++ QG V C + + ++ EK K G+ N + +D
Sbjct: 2 GKIVAITGVSTGLGLALTKWFSSQGHTVVGCGRSAAKIAEMNEKYCGK-GKPNQFYV-VD 59
Query: 252 VTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDR--LWEL---EVDVNLNGVIRGTLLAY 416
+TD +E + F D V+NNAGF+N LWE+ E D ++ ++G+
Sbjct: 60 ITDDSVVKEWATNVCKSFGPPDFVLNNAGFVNQNAPLWEITAEEFDKVVDVNLKGSANVI 119
Query: 417 R-FMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRAYGDQYHVNVTGVRC 593
R F+ K GVIVN +S + Y AT + I GLTRA + ++ C
Sbjct: 120 RSFLPKMIKAGKGVIVNFSSGYGKAGKAKMAPYCATKWGIEGLTRALAMELPPSMA---C 176
Query: 594 LVVCPGLTDSGLV 632
+ + PG+ ++ ++
Sbjct: 177 IALDPGMVNTPML 189
>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 70.9 bits (166), Expect = 1e-12
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Frame = +3
Query: 51 SINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKN 230
S+ LK KV +++ AA GIG A + ++GAKV DI++E+ ++L S G +
Sbjct: 9 SLGDRLKNKVVVLSAAAQGIGKATALACAREGAKVIATDINAEK----LKELHSVPGIET 64
Query: 231 VLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFM--------NDRLWELEVDVNLN 386
+ +DVTDY EA E +R+D++ N AG + +++ W+L +D+N+
Sbjct: 65 RV---VDVTDY----EAIKKFASEVDRVDVLFNCAGLVLGGNIEECSEKQWDLTMDLNVK 117
Query: 387 GVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFA-RPQVSTPIYTATNYAIVGLTRAYGDQ 563
+ R + + K R G I+N AS A + + + Y + A++G T+A
Sbjct: 118 SMFR---MTKECIPKMRQQGSGSIINMASVASSIKGAPNRFAYGTSKAAVIGFTKAIAAD 174
Query: 564 YHVNVTGVRCLVVCPG 611
Y G+R VCPG
Sbjct: 175 YITK--GIRVNAVCPG 188
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 67.3 bits (157), Expect = 1e-11
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Frame = +3
Query: 72 GKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSE-RGEQVTEKLASKYGRKNVLFCRL 248
G+V L+TGA +G+G Y+ ++GA V + D+ + +GE + + A K ++
Sbjct: 10 GRVVLVTGAGNGLGRQYALAFAERGASVVVNDLGGDTKGEGKSGRAADKVVQEIRAKGGK 69
Query: 249 DVTDYPQFEEA--FVMT-VEEFNRIDIVINNAGFMNDRL--------WELEVDVNLNGVI 395
V DY E+ V T ++ F RID+V+NNAG + D+ W+L V+L G
Sbjct: 70 AVADYNSVEQGDQVVETAIKAFGRIDVVVNNAGILRDKSILRMSELDWDLVQRVHLKGSF 129
Query: 396 RGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRAY---GDQY 566
T A+ M K + G+ I+ T ST+ Y+A +VGL+ G +Y
Sbjct: 130 LVTRAAWPHMKKQKFGR---IIMTTSTSGIYGNFGQANYSAAKLGLVGLSNTLAQEGAKY 186
Query: 567 HVNVTGV 587
++ +
Sbjct: 187 NIKCNAI 193
>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
Length = 253
Score = 66.9 bits (156), Expect = 2e-11
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKN--VLF 239
L KV LITGA+ GIG A + QG +LC ++ +R + E L S+ + +
Sbjct: 5 LMEKVMLITGASRGIGAATARLAAAQG--YALC-LNYQRQQAAAEALVSEITQAGGRAIA 61
Query: 240 CRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRL---------WELEVDVNLNGV 392
+ DV D Q + F + F R+D+++NNAG + ++ W+ N+ G
Sbjct: 62 VQADVADERQVMQLFARLDQHFGRLDVLVNNAGILETQMRLEQMELARWQRVFATNVFGS 121
Query: 393 IRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPI-YTATNYAIVGLTRAYGDQYH 569
A + M +GG GG IVN +S A I Y A AI +T G
Sbjct: 122 FLCCREAIKRMSTRQGGNGGAIVNLSSAAARLGAPGEYIDYAAVKGAIDSMT--LGLAKE 179
Query: 570 VNVTGVRCLVVCPGLTDS 623
V G+R V PG+ ++
Sbjct: 180 VAADGIRVNAVRPGVIET 197
>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
Length = 728
Score = 66.9 bits (156), Expect = 2e-11
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
L+G+ LITGAASGIG + L K+G K+ L DI+ E + V +++ + C
Sbjct: 33 LRGETVLITGAASGIGRLTALILAKKGCKLVLWDINLEALKAVAQEIQDLGAETHYFEC- 91
Query: 246 LDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRLWELEVDVNLNGVIRGTLLAY--- 416
DV + E+ ++ + I+INNAG + + + + ++ + LA+
Sbjct: 92 -DVRKKDEVEKVANAVEDQAGNVTILINNAGVVTGKKFLNCSESDVMRTFQVNSLAHIWT 150
Query: 417 --RFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRAYGDQYH-VNVTGV 587
RF+ G IV+ AS A V Y A+ +A VGL A + H + G+
Sbjct: 151 IQRFIPSMMEKNRGHIVSIASVAGYFGLVGCVDYCASKFAAVGLIEALRREIHGLGKMGI 210
Query: 588 RCLVVCPGLTDSGL 629
+CP T +G+
Sbjct: 211 EFTTICPHFTATGM 224
>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
Length = 527
Score = 65.3 bits (152), Expect = 5e-11
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 10/169 (5%)
Frame = +3
Query: 75 KVALITGAASGIGLAYSEELLKQGAK-VSLCDIDSERGEQVTEKLASKYGRKNVLFCR-L 248
KVA+ITG +SGIGLA + L K G K + ++ + + A + + LF R L
Sbjct: 4 KVAVITGCSSGIGLATASILAKDGEKRFRVYATMRNLDKKGSLESACQNALGDTLFIREL 63
Query: 249 DVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRLWELEV--------DVNLNGVIRGT 404
DV+ EEA EE RIDI++NNAG + + E + + N GV+R +
Sbjct: 64 DVSSDDSVEEALNAIYEEEGRIDILVNNAGISHIGMLETQTQSLVKETFNTNFFGVLRMS 123
Query: 405 LLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRA 551
M D G I+N +STA T +Y A+ +A+ GL+ +
Sbjct: 124 KAVIPRMKSDHSGH---IINISSTAGHTGMPFTGLYCASKFAVEGLSES 169
>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Frame = +3
Query: 27 F*ARCFYSSINMD----LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQV 194
F + +YS N LKGK +ITGA SGIG+ + +L + A+V + D +G +
Sbjct: 53 FSIKIYYSGANCSSDEKLKGKTVIITGANSGIGMEVARDLAWRKARVIMACRDVHKGMKA 112
Query: 195 TEKLASKYGRKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDR 353
++ G +V +LD+ + E EE +R+D++INNAG++ +
Sbjct: 113 AAEIVQSAGNMDVEVKKLDLASFASIREFAKEVNEEESRVDVLINNAGYLGSQ 165
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 63.3 bits (147), Expect = 2e-10
Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Frame = +3
Query: 42 FYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKL----- 206
F SS L G+V ITGA+SGIG + EL K G K+ L E+V E+
Sbjct: 32 FGSSPKAKLYGRVCWITGASSGIGENLAYELAKFGCKLVLSARRRSELERVKEQCIAIAK 91
Query: 207 ---ASKYGRKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRL------W 359
S +++L +DVT+Y + E ++ FN+IDI+INN+G L
Sbjct: 92 EANTSYNADQDILVLPMDVTEYDKHTELVRSVLDHFNKIDILINNSGRSQRGLAVETPGI 151
Query: 360 ELE---VDVNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYA 530
E+E +D+N V+ T M + + G IV T+S A + Y AT +A
Sbjct: 152 EVEKAMLDLNFLAVVSLTKAVLPHMIERKNGH---IVVTSSVAGKIGAPMSTSYNATKFA 208
Query: 531 IVGLTRAYGDQYHVNV--TGVRCLVVCPG 611
+ G Y D V + + +VCPG
Sbjct: 209 VQG----YFDGLRVELFPKNIHVTLVCPG 233
>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = +3
Query: 153 VSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINN 332
V L D+ + G VT L +K+G +V F DV++ Q ++AF TV +DIV NN
Sbjct: 24 VVLVDLQKKAGNDVTCLLQNKHGSGSVSFISCDVSNQDQLKDAFWETVSTHGHLDIVFNN 83
Query: 333 AGFMNDRLWELEVDVNL 383
AG +++ W +DVNL
Sbjct: 84 AGILDEERWSKTLDVNL 100
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +3
Query: 72 GKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLD 251
G+VA++TG ASGIG A E L ++GA V++ DI+ E G+QV L S G K V F +D
Sbjct: 24 GRVAIVTGGASGIGKATVERLAREGASVAILDINDELGQQVETDLRSS-GNK-VKFYHVD 81
Query: 252 VTDYPQFEEAF-VMTVEEFNRIDIVINNAGFMNDR 353
V + + + + + I++NNA + +
Sbjct: 82 VANKDMCAHVVGCVAADHGSAVHILVNNAAYFGSK 116
>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/91 (34%), Positives = 49/91 (53%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
L GK ++TGA SGIG A + EL ++GA+V + D E E+ ++ K + V+
Sbjct: 66 LHGKTVIVTGANSGIGKATALELARRGARVIMACRDLESAEKAASEIRYKVPKAEVVCRF 125
Query: 246 LDVTDYPQFEEAFVMTVEEFNRIDIVINNAG 338
LD+ + + E R+DI++NNAG
Sbjct: 126 LDLNSLISVRKFAEDVMREEKRLDILVNNAG 156
>SB_44870| Best HMM Match : adh_short (HMM E-Value=5.4e-11)
Length = 236
Score = 55.2 bits (127), Expect = 5e-08
Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 11/197 (5%)
Frame = +3
Query: 75 KVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDV 254
+V +ITG + G+GLA + G V C ++ E++ E+ AS G++ F +D+
Sbjct: 8 EVVVITGVSYGLGLAMVKWFNANGHTVIGCARSHDKIEKINEEFAS--GKEKRQFYVVDI 65
Query: 255 TDYPQFEEAFVMTVEEFNRIDIVINNAGFMND--RLWELE-------VDVNLNGVIRGTL 407
++ ++ + +F ++INN+G N WE+ VD+N+ G +
Sbjct: 66 SNDEAVKQWSQQVMLDFGAPSLLINNSGVTNKNANFWEVPTEEFNKVVDINIKGT--ANV 123
Query: 408 LAYRFMGKDRGGQGGVIVNTAS--TAFARPQVSTPIYTATNYAIVGLTRAYGDQYHVNVT 581
L + + GVIVN S P+V+ Y T +A+ GL++A ++ +T
Sbjct: 124 LRHFLPSMIEAKRKGVIVNFTSGWGRCVAPEVAP--YCTTKWALEGLSKALAEELPEYLT 181
Query: 582 GVRCLVVCPGLTDSGLV 632
C+ V PG+ ++ ++
Sbjct: 182 ---CVPVNPGIINTPML 195
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 54.8 bits (126), Expect = 7e-08
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
L+G++AL+TG SGIG A E L +GA VS+ D+ ++ +E LA+
Sbjct: 191 LRGRLALVTGGGSGIGRAVCEALANRGASVSVIDLHGVGAKETSENLATHNDTTRHTHFA 250
Query: 246 LDVTDYPQFEEAFVMTVEEFNRID-IVINNAGFMNDRLWELEVDVNLNGVIRGTLLAYRF 422
++V + ++ +E+ R I++N+AG D L + + + VI L R
Sbjct: 251 VNVASSSEVKDLLQAIHKEYQRAPCILVNSAGIAKDALLLKMKEQDFDDVIDVNLKHVRV 310
Query: 423 MG 428
+G
Sbjct: 311 IG 312
>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
Length = 319
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
L GK +ITGA +GIG + +L K+GA+V + + +RG + S+ G + V
Sbjct: 35 LDGKTVIITGATTGIGKETAVDLAKRGARVIIGARNLDRGNTAVRDIQSRSGSQQVFVEH 94
Query: 246 LDVTDYPQFEE-AFVMTVEEFNRIDIVINNAG 338
LD+ + A VM +E RI I+INNAG
Sbjct: 95 LDLASLSSVRKFAEVMNNKE-ERIHILINNAG 125
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
L+G+VA++TGA+SGIG A ++ L + G KV+L ER Q+ +++ + + +
Sbjct: 102 LEGQVAIVTGASSGIGAAVAKALAEAGVKVALAARREERLTQLRDEIIA--NGDVAISVK 159
Query: 246 LDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRL--------WELEVDVN 380
DVT Q E T +DI+++ AG M ++ WE VD+N
Sbjct: 160 TDVTIKEQMESLVKRTDSTLGPVDILVSCAGVMYYQMMKNCAMKDWEQMVDIN 212
>SB_39237| Best HMM Match : adh_short (HMM E-Value=1.6e-11)
Length = 305
Score = 53.2 bits (122), Expect = 2e-07
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 22/207 (10%)
Frame = +3
Query: 75 KVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDV 254
++ LITGA SGIG + E K GAK+ DI+ + +Q E + S + + D
Sbjct: 54 EIVLITGAGSGIGKGMAIEFAKIGAKIVCVDINKQANDQTVEVIKSL--NQKAFGYKCDC 111
Query: 255 TDYPQFEEAFVMTVEEFNRIDIVINNAG------FMNDRLWELEVDVNLNGVIRGTLLAY 416
+ + E + I++NNAG F++ W ++ + +N + +LA
Sbjct: 112 SSREDIYRVADIVKREVGEVTILVNNAGIVSGKKFLDTEDWMIQKTMEVNTMAHFWILAL 171
Query: 417 R-------------FMGKDRGGQGGVIVNTASTA--FARPQVSTPIYTATNYAIVGLTRA 551
F+ G +VN AS+A F P + Y ++ + VG +
Sbjct: 172 NPDYIVFTLQTVKSFLPSMLAKNHGHVVNIASSAGFFGVPGMCD--YCSSKFGAVGFDES 229
Query: 552 YG-DQYHVNVTGVRCLVVCPGLTDSGL 629
+ + TGV+ VVCP ++G+
Sbjct: 230 LRMELSSLGKTGVKTTVVCPYYINTGM 256
>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
Length = 316
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/91 (30%), Positives = 48/91 (52%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
L GK +ITGA +GIG + +L K+GA+V + + +RG + + G + V
Sbjct: 35 LDGKTVIITGATTGIGKETAVDLAKRGARVIIGARNLDRGNAAVRDIQASSGSQQVFVEH 94
Query: 246 LDVTDYPQFEEAFVMTVEEFNRIDIVINNAG 338
LD+ + + ++ R+DI++NNAG
Sbjct: 95 LDLASLSSVRKFAEVINKKEERVDILMNNAG 125
>SB_21622| Best HMM Match : adh_short (HMM E-Value=3.1e-05)
Length = 493
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 84 LITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDVTDY 263
+ITGA SGIG + L K GA V + D +RGEQ ++L + G +N+ LD++
Sbjct: 47 MITGANSGIGKETARALAKSGATVHMVCRDEQRGEQARQELLQESGNQNIYLHVLDMSQ- 105
Query: 264 PQFEEAFVMTVEEFNR-IDIVINNAGFM 344
P F NR + +++NNAG M
Sbjct: 106 PSNVCKFARDFAASNRPLHVLVNNAGCM 133
>SB_35940| Best HMM Match : adh_short (HMM E-Value=0.00021)
Length = 181
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 84 LITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDVTDY 263
+ITGA SGIG + L K GA V + D +RGEQ ++L + G +N+ LD++
Sbjct: 47 MITGANSGIGKETARALAKSGATVHMVCRDEQRGEQARQELLQESGNQNIYLHVLDMSQ- 105
Query: 264 PQFEEAFVMTVEEFNR-IDIVINNAGFM 344
P F NR + +++NNAG M
Sbjct: 106 PSNVCKFARDFAASNRPLHVLVNNAGCM 133
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 52.4 bits (120), Expect = 4e-07
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Frame = +3
Query: 171 DSERGEQVTEKLASKYGRKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMND 350
D E + ++ S R ++ +LD+ + P+ A ++ RID+++NNAG M
Sbjct: 72 DEEGAKDTAREVVSHGVRAEIV--QLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTK 129
Query: 351 RL--------WELEVDVNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTP 506
W V+++G + +A R M K GQGG I+N S P
Sbjct: 130 APFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQ--GQGGRIINITSVHEHTPLPDAS 187
Query: 507 IYTATNYAIVGLTRA 551
YTA +A+ GLT+A
Sbjct: 188 AYTAAKHALGGLTKA 202
>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
Length = 256
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +3
Query: 150 KVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVIN 329
+V + DI G + E L +++G F DV + + EA TV++ +++DI+ N
Sbjct: 65 QVRIIDICINSGLKAQENLEAQFGPGTAEFIECDVCNREKLSEAIRQTVKDHSKLDILCN 124
Query: 330 NAGFMNDRLWELEVDVNL 383
NAG ++++ W V++NL
Sbjct: 125 NAGIIDEKNWPKSVELNL 142
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 51.6 bits (118), Expect = 7e-07
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 16/207 (7%)
Frame = +3
Query: 42 FYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYG 221
++ + M L+ VALI G ASGIG A + L++ GA+ + D+ S G+ ++ S
Sbjct: 278 WFCFLTMLLEKVVALIAGGASGIGRATAIRLIRAGARAVIVDLPSSEGQNTAQEFGS--- 334
Query: 222 RKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMND-------------RLWE 362
+ F V + + A + E++ ++ IN A L+E
Sbjct: 335 --HCTFIPGHVDSESEIKAAIKVAKEKYGCVNASINTAALNTKELTLSESGCPHPLELFE 392
Query: 363 LEVDVNLNGVIRGTLLAYRFMG---KDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAI 533
+ +N G L M D+ G+ GVIVN +S Q Y AT AI
Sbjct: 393 ETMKINAVGTFNVARLVAESMATNTPDQEGERGVIVNVSSIHGTEGQSGKVAYAATKGAI 452
Query: 534 VGLTRAYGDQYHVNVTGVRCLVVCPGL 614
+T + G+R + PG+
Sbjct: 453 NAMTLPMARD--LAKLGIRVNTISPGI 477
>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 50.0 bits (114), Expect = 2e-06
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Frame = +3
Query: 45 YSSINMDLKGKVALITGAASGIGLAYSEELLK-QGAKVSL-CDIDSERGEQVTEKLASKY 218
+S++N+ + LITG ++GIGLA + L K G + + + + + E+ A +
Sbjct: 187 FSTLNLLRSVAIVLITGCSTGIGLAAALLLAKDDGRRFKVYATMRNLEKRGILEEAARRQ 246
Query: 219 GRKNVLFCRLDVTDYPQFEEAFVMTVEEFNRIDIVINNAGFMNDRLWELEV--------D 374
++ +LDVT E RID+++NNAG + E +
Sbjct: 247 LGDTLIVKQLDVTSDESVTEVLQSIYSAERRIDVLVNNAGVGLIGVLETHTMSLVREMFN 306
Query: 375 VNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRA 551
VN GV+R L + K +G G I+N S R IY ++ +A+ G+ +
Sbjct: 307 VNFFGVVR---LTKAVIPKMKGNPSGHIINIPSIGGIRGVPFNAIYCSSKFAVEGMAES 362
>SB_33638| Best HMM Match : adh_short (HMM E-Value=0.0014)
Length = 268
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSL-CDIDSERGEQVTEKLASKYGRKNVLFC 242
L + AL+TG GIGLA S +L K G + L + + ER E+ +L SKY + V
Sbjct: 79 LSNRYALVTGGTRGIGLAISHKLAKNGYYLILGYNANDERAEKAKSELESKYNVR-VFTV 137
Query: 243 RLDVTDYPQFEEAFVMTVEEF-NRIDIVINNAG 338
+ DV + F F N+++ ++NAG
Sbjct: 138 KGDVAEDSTINAFFESIKANFDNKLNAFVHNAG 170
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 45.2 bits (102), Expect = 6e-05
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Frame = +3
Query: 72 GKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKL-----ASKYGRKNVL 236
GKVA++TG +GIG A + ELL G+KV + + ++ L S V+
Sbjct: 16 GKVAIVTGGGTGIGKAIAAELLSLGSKVVIASRSEGKLQKAAVDLEKFIPPSSSAEVKVI 75
Query: 237 FCRL----DVTD---------YPQFEEAFVM--TVEEFNRIDIVINNAG--------FMN 347
C + VT+ Y + +M T+ + RID ++NN G M+
Sbjct: 76 PCNIRKESQVTNLMESSMSSYYFSLKVTNLMKSTLSSYGRIDYLVNNGGGQFLCPVSNMS 135
Query: 348 DRLWELEVDVNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNY 527
+ W +D NLNG AYR + GG IVN F + + A
Sbjct: 136 YKGWNAVIDTNLNGTFLCCTEAYRLWMSEHGGS---IVNII-VDFFKGYPNMAHTGAARA 191
Query: 528 AIVGLTRAYGDQYHVNVTGVRCLVVCPGL 614
+ LT + ++ N G+R V PG+
Sbjct: 192 GVHNLTMSLAVEWISN--GIRINNVAPGV 218
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Frame = +3
Query: 300 EFNRIDIVINNAGFMNDRLWELEVDVNLNGVIRGTLLAY-----RFMGKDRGGQGGVIVN 464
E +DI++NNAG ++ + + D + I LLA+ F+G+ G IV
Sbjct: 1296 EVGDVDILVNNAGILHGKRLLDQTDAQIQKAIELNLLAHFWTSRSFLGRMLEQNQGHIVT 1355
Query: 465 TASTAFARPQVSTPIYTATNYAIVGLTRAYGDQ-YHVNVTGVRCLVVCPGLTDSGL 629
+S + + P Y A+ Y VG A + Y + GV+ +V P D+G+
Sbjct: 1356 ISSVSGSFPTAFQVEYCASKYGAVGFHDALSHELYTLGKDGVKTTLVQPFFFDTGI 1411
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 78 VALITGAASGIGLAYSEELLKQ-GAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDV 254
+A +TG GIG ++L++Q + L E+GE L + GR V + +LDV
Sbjct: 25 MAEVTGGNRGIGYCVVQQLVQQFDGNIILTARSDEQGEAACRSL-NVGGR--VEYHKLDV 81
Query: 255 TDYPQFEEAFVMTVEEFNRIDIVINNAGFM 344
T E + E++ +DI++NNAG +
Sbjct: 82 TSNDSIHELTLHVQEKYGGLDILVNNAGIL 111
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 41.5 bits (93), Expect = 7e-04
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +3
Query: 354 LWELEVDVNLNGVIRGTLLAYRFMGKDR---GGQGGVIVNTASTAFARPQVSTPIYTATN 524
L+E + VN G L M K+ GG+ GVI NTAS A Q+ Y+A+
Sbjct: 119 LFEKVLKVNTTGSFNVIRLVAEQMIKNEPTEGGERGVITNTASVAAFDGQMGQAAYSASK 178
Query: 525 YAIVGLTRAYGDQYHVNVTGVRCLVVCPGLTDSGLVXDLDKQL 653
IVG+T N G+R + PGL + L+ L +++
Sbjct: 179 GGIVGMTLPIARDLARN--GIRVNTIAPGLFLTPLLESLPEKV 219
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 38.7 bits (86), Expect = 0.005
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 12/171 (7%)
Frame = +3
Query: 75 KVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGR--KNVLFCR- 245
+V ++TG +SGIGLA + LL A + R + L K +++L +
Sbjct: 35 RVVVVTGCSSGIGLALAV-LLSHDADKRFKVYATMRNLGKKDALLEKCSGVVEDLLNIKE 93
Query: 246 LDVTDYPQFEEAFVMTVEEFNRIDIVINNAGF---------MNDRLWELEVDVNLNGVIR 398
LDV + VE+ RID+++NNAG D + ++ + N+ G++R
Sbjct: 94 LDVCSDESVKAVVAEIVEKEGRIDVLVNNAGIGLFCVPECATTDAINKV-FEPNVYGLMR 152
Query: 399 GTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRA 551
T M K R G +VN S + IY A+ +A+ G A
Sbjct: 153 MTNAVIPHMKKQRAGH---VVNIGSVLGIVGTPFSEIYCASKFAVEGYAEA 200
>SB_16518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +3
Query: 63 DLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFC 242
+L G+V ++TGA+SGIGLA + L GA V + D E+ + A + +K C
Sbjct: 90 NLDGRVVMVTGASSGIGLATASALAAHGAHVVMACRDMEKAHK-----AELHIKKTNKDC 144
Query: 243 RLDV 254
+L+V
Sbjct: 145 KLEV 148
>SB_19040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 63 DLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQ 191
+L G+V ++TGA+SGIGLA + L GA V + D E+ +
Sbjct: 42 NLDGRVVMVTGASSGIGLATASALAAHGAHVVMACRDMEKAHK 84
>SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)
Length = 272
Score = 37.1 bits (82), Expect = 0.015
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 13/191 (6%)
Frame = +3
Query: 78 VALITGAASGIGLAYSEELLKQGAKVSL-CDIDSERGEQVTEKLASKYGRKNVLF-CRLD 251
VAL+TGAA +G L G +V + + E E++ +++ S ++ L
Sbjct: 14 VALVTGAAKRLGAGIVRALHGSGFRVVIHYNNSGEDAEKIVQEMNSVRSDSAIMLKADLS 73
Query: 252 VTDYPQFEEAFVMTVEEFNRIDIVINNA--------GFMNDRLWELEVDVNLNGVIRGTL 407
+ TV F ++D+++NNA G + + W + VNL+ +
Sbjct: 74 TNIQETARKLIEDTVTAFGQLDLLVNNASQFCPTESGSVQEETWNKLMGVNLSFPFFLSQ 133
Query: 408 LAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRAYGDQY--HVNVT 581
A+ + + G I+N RP + +Y + + T+A + V V
Sbjct: 134 AAFPHLKRSHGS----IINMIDIHAERPLANHSVYCVSKAGLHMCTQALAKDFAPDVRVN 189
Query: 582 GVR-CLVVCPG 611
GV ++ PG
Sbjct: 190 GVSPGFIMVPG 200
>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 36.3 bits (80), Expect = 0.027
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 42 FYSSINMD----LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQV 194
FY +D GKV ITGA+SGIG + E K G+K+ L +R EQV
Sbjct: 856 FYERFGVDPGSVFNGKVVWITGASSGIGEHLAYEFTKHGSKLVLSARREKRLEQV 910
>SB_14258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 34.7 bits (76), Expect = 0.081
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCR 245
++GKVA ITGA+SGIG + +L G K+ L + ++V K + N F
Sbjct: 49 MQGKVAWITGASSGIGEFLAYQLAGNGCKLVLSARRKQELDRVKRKCLEIAKKANPEFNE 108
Query: 246 LDVTDYP 266
D+ P
Sbjct: 109 SDIMVLP 115
>SB_49030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVT 197
L GKVA +TG SGIG +E L++ ++++ R Q+T
Sbjct: 23 LAGKVAFVTGGGSGIGFTITEVLMR-SHQITIPHTPPPRSNQIT 65
>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
Length = 453
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKV 155
L GKV L+TGA+ GIG + L K GA V
Sbjct: 50 LSGKVCLVTGASRGIGKGIALMLGKAGATV 79
>SB_48033| Best HMM Match : ShTK (HMM E-Value=0.0056)
Length = 64
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 461 EHGLYSICETSSVDSDLHSNELRYCWPHQSLRGSVPRQCD 580
E + C S +L S + +YC H+S+R PR CD
Sbjct: 23 EEKIEGYCADKSSSCNLFSRQEKYC-EHRSMRDLCPRSCD 61
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 66 LKGKVALITGAASGIGLAYSEELLKQGAKV 155
L GK ITGA+ GIG A + ++ + GA V
Sbjct: 3 LAGKTVFITGASRGIGKAIAVKVARDGANV 32
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -2
Query: 446 LPSAILPHKPICEQRTSDDAIQINIDFEFPKPVVHEASIINDNVNPVELLYCHHKCLFKL 267
L S I P P + + + + F H A ++ ++PV + H K LF L
Sbjct: 311 LASNISPFWPAISRPSGQQYLALLASNVFCATYGHTAPLVLCRISPVRPITIHQKALFCL 370
Query: 266 WI 261
WI
Sbjct: 371 WI 372
>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
Length = 1102
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -2
Query: 632 HQTTVRESRAHDEASHSG 579
+++T RES +H+EASH+G
Sbjct: 172 YKSTTRESESHEEASHTG 189
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.1 bits (62), Expect = 4.0
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +3
Query: 9 KLSTS-HF*ARCFYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERG 185
KLS + HF R F+ +NMD +G+V I +G S +L+ V L D R
Sbjct: 209 KLSVANHFRDRVFWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPL-GPDGLRW 267
Query: 186 EQVTEKLASKYG--RKNVLFCRLDVTD 260
++ LA+ YG +K+ L R++ TD
Sbjct: 268 LKI--HLANLYGAKKKSSLDERVEYTD 292
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 250 SNRQNKTF--FRPYFEASFSVTCSPRSESMSHKETLAPCFNNSSLYAKPMPEAAPVINAT 77
S ++N+ F R FE S T SP + L F + Y+KP P P +++T
Sbjct: 518 SLKRNEHFCQVRQLFEPSNVTTTSPALRKPNGGSRLVTAFADVGRYSKPQPSLMPNVDST 577
>SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)
Length = 944
Score = 29.1 bits (62), Expect = 4.0
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +3
Query: 9 KLSTS-HF*ARCFYSSINMDLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERG 185
KLS + HF R F+ +NMD +G+V I +G S +L+ V L D R
Sbjct: 686 KLSVANHFRDRVFWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPL-GPDGLRW 744
Query: 186 EQVTEKLASKYG--RKNVLFCRLDVTD 260
++ LA+ YG +K+ L R++ TD
Sbjct: 745 LKI--HLANLYGAKKKSSLDERVEYTD 769
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 519 TNYAIVGLTRAYGDQYHVNVTGVRCLVVCPGLTDSGLVXDL 641
TNY I GL G YHV V G + +T ++ D+
Sbjct: 2056 TNYTITGLGLTNGHMYHVTVRGTNRVGQTAQVTTKAVLVDV 2096
>SB_12716| Best HMM Match : E3_binding (HMM E-Value=9.7)
Length = 133
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/80 (32%), Positives = 38/80 (47%)
Frame = +3
Query: 372 DVNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTPIYTATNYAIVGLTRA 551
DVNL G+I TL + K GG +VN +S A +T Y+ T Y + + A
Sbjct: 18 DVNLWGLIDVTLTFLPLIRKC----GGRVVNISSIAGRLSIPNTGPYSVTKYGVEAFSDA 73
Query: 552 YGDQYHVNVTGVRCLVVCPG 611
+ V+ GV+ +V PG
Sbjct: 74 L--RREVSPWGVKVTLVEPG 91
>SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 476 SICETSSVDSDLHSNELRYC-WPHQSLRGSVPRQCDRSAMPRRVPWT 613
+I E V + + +RYC WP S + + RQ SA +PWT
Sbjct: 534 TIAEVCEVTPLISLSAMRYCCWPQMS-QSRMVRQLAFSACSTFIPWT 579
>SB_14191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 617 RESRAHDEASHSGHIDVVLIPVSSGEANNSVVRCCVDRSRHLRSR 483
R H A+H+ +V + +++G + S CC + + +LR R
Sbjct: 406 RSCTLHVHAAHADRQNVTNLRLANGTSQESFNNCCNELTNYLRKR 450
>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
Length = 681
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 721 VIRALHLESVMSSSQAVSYFEDISCLSRS 635
V R +L+ + S +S FEDI+CL+RS
Sbjct: 319 VDRLSNLQRLFLSFNCISRFEDINCLTRS 347
>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
Length = 337
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 63 DLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFC 242
D K L+TG SG+G + L G V + +++G++ E+ S K +
Sbjct: 238 DYHNKYVLVTGCDSGLGRDLAIRLDGMGFHVFGACL-TQQGKRDLEQTCS----KRTVGL 292
Query: 243 RLDVTDYPQFEEAF 284
+DVT + Q EAF
Sbjct: 293 LMDVTSHEQIAEAF 306
>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
Length = 114
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 69 KGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSER 182
+GK ++TG A G L ++GA+V+L DI R
Sbjct: 10 EGKKVVVTGGAGYFGSRLGYALSEKGAEVTLFDIREPR 47
>SB_33610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 488 TSSVDSDLHSNELRYCWPHQSLR-GSVPRQCDR-SAMPRRVPWTH 616
T SDL LR CW +S+R S+ RQ + RR+ W H
Sbjct: 63 TGMTMSDLLDLRLRNCWEGRSVRASSLLRQLAKGGCAARRLSWDH 107
>SB_27290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 63 DLKGKVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFC 242
D K L+TG SG+G + L G V + +++G++ E+ S K +
Sbjct: 45 DYHNKYVLVTGCDSGLGRDLAIRLDGMGFHVFGACL-TQQGKRDLEQTCS----KRTVGL 99
Query: 243 RLDVTDYPQFEEAF 284
+DVT + Q EAF
Sbjct: 100 LMDVTSHEQIAEAF 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,694,479
Number of Sequences: 59808
Number of extensions: 503387
Number of successful extensions: 1530
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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