Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    29   0.77 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   3.1  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.5  
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 28  PKSTQITFPQTTAAPKVNKKQGLXELYNNEGQS---TAGYNLXNDNRSFKVRNGFNVDEA 198
           P ST  +FP ++   + +K      + N    +   T+ +NL    +SF  RNG  V E+
Sbjct: 251 PISTNYSFPSSSLEDQPDKNVQSSAVENKNKHTNLVTSSFNLTKPMKSFIRRNGLRVQES 310

Query: 199 PRD 207
             D
Sbjct: 311 VTD 313


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = -2

Query: 322 CTVXYSGQHXVH-----YYSWMQWFGCFDCCNFH 236
           C V +  +  VH     Y SWMQ F C  C + H
Sbjct: 263 CQVSFKVERLVHKELNEYLSWMQPFTCDSCGSLH 296


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 523 NYDESGEDDGQYXPPQGEDDGLYRPEVXDREL 618
           +Y ++ E+DGQ  P    +D LY   V  REL
Sbjct: 136 SYLKAVENDGQSEPVNVNEDYLYSVNVVSREL 167


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 596 RRCXTESFCLERIL*ILQPVVTDXLKNEK 682
           +RC  ES C   +L   QP  TD L N K
Sbjct: 348 KRCVVESLCFLFLLLTNQPRFTDELVNFK 376


>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 451 RPEPPANLNKVAYNTNIGXNAPANNYDESGEDDGQYXPPQGEDDGLYRP 597
           +P PP  +NK    TN   +    N     E+ G++   + + D  ++P
Sbjct: 10  KPPPPPIINKPFEQTNSSASLTQKNSSSETENVGRHGKRRMDQDLSFKP 58


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 37  TQITFPQTTAAPKVNKKQGLXELYNN---EGQSTAGYNLXNDNRSFKVRNG 180
           T+  +P T  + K+   + L   Y++   +G++T   +  +DN +F++ NG
Sbjct: 482 TKSGYPATLGSKKITNVRDLTTGYDSSSTDGKATLPVSKSSDNVTFELENG 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,460
Number of Sequences: 5004
Number of extensions: 39850
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)