Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              27   0.27 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.4  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   7.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +1

Query: 25  CPKSTQITFPQTTAAPKVNKKQGLXE--LYNNEGQSTAGY 138
           CP    +T P+TT   K NKK    E     N G+  A Y
Sbjct: 14  CPDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYY 53


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 325 NYNSVPYEPEKNNVGPYSKTNYFN 396
           NYN   Y    NN   Y+K  Y+N
Sbjct: 88  NYNYSNYNNYNNNYNNYNKKLYYN 111


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 274 MQWFGCFDCCNF 239
           M+ FGCF+ C F
Sbjct: 49  MKKFGCFEACVF 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,372
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)