Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0019
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    44   3e-05
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    37   0.004
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    31   0.25 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   1.0  
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    29   1.0  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   1.3  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   4.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   5.4  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   5.4  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    26   7.2  

>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 403
           GDL  +   E +F +  P  VIH A+ V    HN+A ++ +F  N+    NI++AC K+N
Sbjct: 54  GDLTKQGDIERVFEEFHPRVVIHTASPV----HNLARDI-YFEVNVDGTANIIKACQKFN 108

Query: 404 VKKVVSCLST-CIFPDKTTYPIDET 475
           V  +V   S   +F       +DE+
Sbjct: 109 VDALVYTSSAGVVFNGADLINVDES 133


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +2

Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
           DLRDK     +F   K   VIH AA+   +  +M   L+++  N+     +L    ++ V
Sbjct: 63  DLRDKEGLAQIFDTFKIKGVIHFAAL-KAVGESMKLPLEYYDNNICGTITLLNVMREHRV 121

Query: 407 KKVVSCLSTCIFPDKTTY 460
           K VV   S  ++ D T +
Sbjct: 122 KTVVFSSSATVYGDATRF 139


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +2

Query: 452 TTYPIDETMVHNGPPHSSNF--GYSYAKRMI---DVLNRGYNESYGCMFTSVIPCNVFGP 616
           TT+P  +  + N PP  S F  G S+  ++      L R   + YG     +   N+  P
Sbjct: 324 TTFPSSKPQIVNAPPAPSYFSPGSSFGAQLCANGSTLLRADTKQYGLALPKITNSNLISP 383

Query: 617 HDNFS-LKSS-HVIPAL 661
           +  F+ +KSS   +P L
Sbjct: 384 NQTFNPVKSSVKALPTL 400


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 335 NLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMV 481
           N     E + +  NILQ+     V K  SCL T I   KT+  I ET++
Sbjct: 537 NASAAEEIIPLLSNILQSSDTIVVSKAYSCLETIIESLKTSPNIIETII 585


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 323 CETVPRPLPLNVLHG*ACV*QIELLFEFYLG--GRHPWNR*ISTSHYHNHY 177
           C + P   PL+V+     + Q+EL  EF +G   R  WN  + T+    +Y
Sbjct: 16  CTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNY 66


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
 Frame = +2

Query: 269 HKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPD 448
           +K TH+I+ AA    +  +    L F + N+    N+L+ C +  + K     +   F  
Sbjct: 89  NKITHIINFAAE-SSVDRSFIDPLYFTKNNILSTQNLLE-CVRILLGKKEELRNRLNFVH 146

Query: 449 KTTYPI-----DETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFG 613
            +T  +     +   V      +    Y+ +K  +D++ + Y  SY    T +   NV+G
Sbjct: 147 VSTDEVYGEQDENASVDEKSKLNPTSPYAASKAAVDLIIQSYRYSYKISVTVIRANNVYG 206

Query: 614 P 616
           P
Sbjct: 207 P 207


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +2

Query: 323  NMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHS 502
            N   N   F+    +   I+    +YNV++ +S L + I      YP+D   V + P   
Sbjct: 1021 NNTSNGSLFKRLRYLKSRIIDLNTQYNVRESISSLCSSI------YPLDIKTVDSSPNKR 1074

Query: 503  SNFGYSYAKRMIDVLNRG 556
             ++G S     +  +N G
Sbjct: 1075 LDYGNSGFAHEVQFINVG 1092


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 326 MAHNLDFFRENMSINDNILQACHKYNVKKVVS 421
           +  NLD  +   S     +Q CHK+N+  VV+
Sbjct: 757 LVENLDLVKNGCSNMVKHIQNCHKFNIPVVVA 788


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 545 LNRGYNESYGCMFTSVIPCNVFGPHDN 625
           LN G N+S    FTS +  + F PH +
Sbjct: 261 LNNGRNQSSSDFFTSSLTDHAFNPHSS 287


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
 Frame = +2

Query: 173 RNSDYDSETWIFSGSKDG-----DLRDKTQ 247
           R+S   SET +FSGS+DG     DL ++TQ
Sbjct: 229 RSSFNQSETIVFSGSEDGKVYLWDLENETQ 258


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 236 DKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFR 352
           D T  + L    K +HV HL + V G+        D FR
Sbjct: 343 DTTSVDKLMTIEKFSHVQHLVSQVSGVLRPDKTRFDAFR 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,469
Number of Sequences: 5004
Number of extensions: 73003
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)