Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0019
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0960 + 26324530-26324551,26324633-26325597 102 3e-22
03_02_0371 + 7858170-7859624 45 6e-05
06_01_0610 - 4415080-4415461,4415872-4416851 45 8e-05
09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999... 43 2e-04
08_02_1326 - 26158279-26159712 40 0.002
02_05_1032 + 33637108-33638421 40 0.002
11_06_0237 - 21606240-21606395,21606499-21606706,21607565-216076... 39 0.004
10_08_0016 + 14127200-14127615,14127723-14127816,14127904-141280... 39 0.004
09_04_0646 - 19194261-19195730 38 0.007
08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640... 34 0.11
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 31 0.81
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 31 1.1
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 30 2.5
02_05_0956 - 33064104-33066425 29 3.3
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938... 28 9.9
06_03_0796 - 24690115-24690247,24690622-24690808,24691060-246912... 28 9.9
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 9.9
>06_03_0960 + 26324530-26324551,26324633-26325597
Length = 328
Score = 102 bits (245), Expect = 3e-22
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY-N 403
DL ++ EA FA P +V+ AA VGG+ N DF N+ I N++ A K +
Sbjct: 55 DLTRQSDVEAFFAAELPRYVVLAAAKVGGIHANSTFPADFIAANLQIQTNVVDAALKCGS 114
Query: 404 VKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMF 583
V+K++ S+CI+P PI E + +GP +N Y+ AK + + Y +G
Sbjct: 115 VRKLLFLGSSCIYPKFAPQPIPENSLLSGPLEPTNEWYAVAKIAGIKMCQAYRIQHGFDA 174
Query: 584 TSVIPCNVFGPHDNFSLKSSHVIPALIRRMDDA 682
S +P N++GP DNF ++SHV+PALIRR +A
Sbjct: 175 ISAMPTNLYGPQDNFHPENSHVLPALIRRFHEA 207
>03_02_0371 + 7858170-7859624
Length = 484
Score = 45.2 bits (102), Expect = 6e-05
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
DGD+ D LF THV+HLAA G+ H + + + R N+ +L+A
Sbjct: 176 DGDIADAELLAKLFDVVPFTHVLHLAAQ-AGVRHALVDPMSYVRANVGGFVALLEAARMA 234
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ + P E H+ ++ Y+ K+ + + YN YG
Sbjct: 235 NPQPAIVWASSSSVYGLNSHVPFSE---HDRTDRPASL-YAATKKAGEEIAHAYNHIYGL 290
Query: 578 MFTSVIPCNVFGP 616
T++ V+GP
Sbjct: 291 SLTALRFFTVYGP 303
>06_01_0610 - 4415080-4415461,4415872-4416851
Length = 453
Score = 44.8 bits (101), Expect = 8e-05
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
DGD+ D LF THV+HLAA G+ + M + + R N++ ++L++C
Sbjct: 166 DGDINDGRLLAKLFDVVPFTHVLHLAAQ-AGVRYAMENPSSYVRSNVAGLVSLLESCKDA 224
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
+ + VV S+ ++ P E + P Y+ K+ + + YN YG
Sbjct: 225 DPQPAVVWASSSSVYGLNDAVPFSEAHRTDKPASL----YAATKKAGEAITHTYNHIYGL 280
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 281 SITGLRFFTVYGP 293
>09_06_0023 -
20299435-20299528,20299666-20299757,20299873-20299955,
20300066-20300147,20300235-20300462,20300646-20300747,
20300834-20300969,20301105-20301514
Length = 408
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 403
GDL+ K E +FA + VIH A + + ++AH ++ N++ N+ A KY
Sbjct: 121 GDLKSKDDMEKVFAAKRYDAVIHFAGLKA-VGESVAHPQMYYENNVAGTMNLYSAMTKYG 179
Query: 404 VKKVVSCLSTCIF--PDKT 454
KK+V S ++ P+KT
Sbjct: 180 CKKIVFSSSATVYGQPEKT 198
>08_02_1326 - 26158279-26159712
Length = 477
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
D D+ D E LF + THV+HLAA G+ + M + N++ ++ + K+
Sbjct: 180 DADINDAALLERLFDAARFTHVLHLAAQ-AGVRYAMRAPQTYVASNVAGLVSVFEVAAKH 238
Query: 401 NVKK--VVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYG 574
+ +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 239 ADPQPAIVWASSSSVYGLNTDAPFSEEHRTDRPASL----YAATKKAGEAIAHAYNHIYG 294
Query: 575 CMFTSVIPCNVFGP 616
T + V+GP
Sbjct: 295 LSITGLRFFTVYGP 308
>02_05_1032 + 33637108-33638421
Length = 437
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GD+ D LF THV+HLAA G+ + M + + N++ +L+AC
Sbjct: 154 EGDINDGRLLAKLFDVVPFTHVLHLAAQ-AGVRYAMENPASYVHSNIAGLVTLLEACKDA 212
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
+ + +V S+ ++ P E+ + P Y+ K+ + + YN YG
Sbjct: 213 DPQPAIVWASSSSVYGLNDKVPFTESDRTDQPASL----YAATKKAGEEITHTYNHIYGL 268
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 269 SITGLRFFTVYGP 281
>11_06_0237 -
21606240-21606395,21606499-21606706,21607565-21607697,
21607775-21607904,21607999-21608092,21609258-21609652
Length = 371
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +2
Query: 281 HVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPD-KTT 457
HV +LAA +GG+ +++ N I+ N+L+A VK+ S CI+P+ K
Sbjct: 89 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQL 148
Query: 458 YPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGP 616
+ + P Y K + L + Y + +G N++GP
Sbjct: 149 DTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGP 201
>10_08_0016 +
14127200-14127615,14127723-14127816,14127904-14128033,
14128113-14128245,14128342-14128549,14128683-14128838
Length = 378
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +2
Query: 281 HVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTY 460
HV +LAA +GG+ +++ N I+ N+L+A VK+ S CI+P+
Sbjct: 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQL 155
Query: 461 PIDETMVHNGP-PHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGP 616
+ ++ + P Y K + L + Y + +G N++GP
Sbjct: 156 ETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGP 208
>09_04_0646 - 19194261-19195730
Length = 489
Score = 38.3 bits (85), Expect = 0.007
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
D D+ D E LF THV+HLAA G+ + M + N++ +L+ K+
Sbjct: 174 DADINDALLLEKLFDLVPFTHVLHLAAQ-AGVRYAMEAPQTYVASNVAGLVTVLEVAAKH 232
Query: 401 NVKK--VVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYG 574
+ +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 233 ADPQPAIVWASSSSVYGLNTDAPFSEEHRTDRPASL----YAATKKAGEAIAHTYNHIYG 288
Query: 575 CMFTSVIPCNVFGP 616
T + V+GP
Sbjct: 289 LSITGLRFFTVYGP 302
>08_02_0471 -
17563245-17563488,17563564-17563655,17563941-17564023,
17564418-17564499,17565234-17565461,17565553-17565654,
17565818-17565953,17566080-17566129,17566465-17566572,
17568702-17568911
Length = 444
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DLRDK E +FA + V+H A + + ++ L ++ N++ N+L+ +
Sbjct: 108 DLRDKGALEKVFASTRFDAVVHFAGL-KAVGESVQKPLLYYDNNVNGTVNLLEVMSAHGC 166
Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
KK+V S ++ P E
Sbjct: 167 KKLVFSSSAAVYGSPKNSPCTE 188
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 260 FAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCI 439
F KH ++V H +G + LD+ +E + +N L CH++N + SC S
Sbjct: 255 FTKHSSSNVEHPGTYIGAI-----SKLDYLKE-LGVNCVELMPCHEFNELEYFSCSSKMN 308
Query: 440 F 442
F
Sbjct: 309 F 309
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 31.1 bits (67), Expect = 1.1
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 1/182 (0%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY- 400
GD+ D A F + V H+AA V + + F N+ +N+L+A +
Sbjct: 58 GDVADVESLAAAFDRCDA--VFHVAAAVEAWLPDPSI---FITVNVGGLENVLKAARRTP 112
Query: 401 NVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCM 580
VKK+V S Y DET +H G + Y +K + D + + G
Sbjct: 113 TVKKIVYTSSFFAIGPTDGYVADETQMHQGKTFCTE--YEKSKVLADQIAL-QAAAEGMP 169
Query: 581 FTSVIPCNVFGPHDNFSLKSSHVIPALIRRMDDAMQKGDPTFXSDGEAXNHSDSLFIHXI 760
T V P ++GP L + +++ ++ + G D E+ H D + +
Sbjct: 170 ITIVYPGFMYGPG---KLTAGNLVSRILIERFNGRLPGYVGHGHDRESFCHVDDVVAGHV 226
Query: 761 SA 766
+A
Sbjct: 227 AA 228
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 425 LSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIP 598
+ T IF + T +HN + + G YA R DV+N NE+ C +P
Sbjct: 731 VDTNIFGTQDQMKSSMTAIHNENKNLYHCGIVYAHRNEDVVNTRTNEASNCAEDKTVP 788
>02_05_0956 - 33064104-33066425
Length = 773
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Frame = +2
Query: 254 ALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRE----NMSINDNILQACHKYNVKKVVS 421
A AKH+ TH++H +++ +F + + L +S ++ ++QA + V++
Sbjct: 94 AKLAKHQATHIVHHPSIL-AIFPDKRNELQTTLSPSFLGLSPSNGLVQASNDGGTGAVIA 152
Query: 422 CLSTCIFP-DKTTYPIDETMVHNGPPHSSNF 511
+ T ++P ++ ++ +D ++ PP S F
Sbjct: 153 VVDTGVYPKNRRSFTVDPSL----PPPPSTF 179
>09_02_0435 -
9384225-9384412,9385084-9385133,9385209-9385274,
9385360-9385451,9385893-9385975,9386181-9386259,
9386888-9387115,9387196-9387297,9387719-9387854,
9387984-9388033,9389391-9389618
Length = 433
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
D+RDK E +F+ + V+H A + + ++ L ++ N++ +L+ +
Sbjct: 78 DIRDKGGLEKVFSSTRFDAVVHFAGL-KAVGESVQKPLLYYDHNVAGTIILLEVMAAHGC 136
Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
KK+V S ++ P E
Sbjct: 137 KKLVFSSSAAVYGSPKNSPCTE 158
>06_03_0796 -
24690115-24690247,24690622-24690808,24691060-24691222,
24691503-24691688,24692005-24692174,24692648-24692774
Length = 321
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 374 NILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHN 487
N+L+ACH+ VK+VV S +P D+ +
Sbjct: 112 NVLKACHEAKVKRVVMVSSIAAVFSNPNWPKDKAFTED 149
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 27.9 bits (59), Expect = 9.9
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 403
GD+ L ++H AA + ++ ++ +F + N+ +L+AC
Sbjct: 64 GDIASADLVNYLLTTESIDTIMHFAAQTH-VDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122
Query: 404 VKKVVSCLSTCIFPDKTTYPIDETMV---HNGPPHSSNFGYSYAKRMIDVLNRGYNESYG 574
+ +ST D+ DE V H YS K ++L Y SYG
Sbjct: 123 QIRRFIHVST----DEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 178
Query: 575 CMFTSVIPCNVFGPH 619
+ NV+GP+
Sbjct: 179 LPVITTRGNNVYGPN 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,674,074
Number of Sequences: 37544
Number of extensions: 448732
Number of successful extensions: 951
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -