Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0019
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                   37   0.022
SB_34350| Best HMM Match : Peptidase_M22 (HMM E-Value=1.9)             34   0.15 
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)             31   0.82 
SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_27568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   28   7.7  

>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +2

Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
           DL +K   + +F KHK   V+H A +   +  ++   L ++  N++   ++L+   K+ V
Sbjct: 96  DLLNKEALDDIFKKHKFNGVLHFAGL-KAVGESVQIPLRYYHNNLTGTLHLLECMKKHGV 154

Query: 407 KKVVSCLSTCIFPDKTTYPIDET 475
             +V   S  ++ D    PI E+
Sbjct: 155 HNLVFSSSATVYGDPQFLPITES 177


>SB_34350| Best HMM Match : Peptidase_M22 (HMM E-Value=1.9)
          Length = 180

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +2

Query: 506 NFGY-SYA-KRMIDVL----NRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIR 667
           N GY  YA KR+I +     N  Y + Y    T  + C+V   HD+  +KS+  +P   R
Sbjct: 43  NAGYCGYAGKRLISLFSLRCNARYRDHYDIKSTPFLQCDV-RYHDHQDMKSTPFLPCDAR 101

Query: 668 RMDDAMQKGDPTFXSDGEAXNHSD 739
             D    K  P    D    +H D
Sbjct: 102 YCDHQDMKSTPFLQCDARYRDHQD 125


>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
 Frame = +2

Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFH-NMAHNLDFFRENMSINDNILQACHKYN 403
           D+ D    +++   H    ++H +A++  +   N+   L     N+    NI++ C KYN
Sbjct: 80  DVLDPQSLQSIVVNHNIDWIVHFSAILSAVGEQNVTQALQV---NIEGFHNIIETCRKYN 136

Query: 404 VKKVVSCLSTCIFPDKTTYPIDETM-VHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCM 580
           + ++ S  +   F  +T  P+D T  +    P +    Y  AK  +++L   Y+  YG  
Sbjct: 137 L-RLFSPSTIGAFGPET--PMDNTPDITIQRPKTI---YGVAKVHMELLGEYYHHRYGLD 190

Query: 581 FTS 589
           F S
Sbjct: 191 FRS 193


>SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 164 RQKRNSDYDSETWIFSGSKDGDL 232
           R+K +S +D  TW F+ +K GDL
Sbjct: 649 REKADSSFDIATWRFASNKPGDL 671


>SB_27568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 368 NDNILQACHKYNVKKVVSCLST 433
           +DN+L+ CHK+ +KK V  L +
Sbjct: 110 SDNLLEVCHKHQLKKKVELLQS 131


>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 140 IKTVIERDRQKRNSDYDSETWIFSGSKDG-DLRDKTQTEALFAKHKPTHVIHL 295
           +++++E   Q +   Y ++ W F     G DL  K Q + + A  K TH +HL
Sbjct: 16  LQSLVELPAQFKEIPYQAK-WCFRDLTHGKDLLAKMQAKIVTAPDKTTHYVHL 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,481,033
Number of Sequences: 59808
Number of extensions: 536948
Number of successful extensions: 1365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)