Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0019
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical pr... 273 8e-74
AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans GDP-4-keto-6-... 273 8e-74
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 50 3e-06
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 29 3.9
>U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical
protein R01H2.5 protein.
Length = 315
Score = 273 bits (670), Expect = 8e-74
Identities = 123/188 (65%), Positives = 148/188 (78%)
Frame = +2
Query: 137 AIKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGGL 316
AIK V+E ++ D E W+F GSKD DL + +T LF KPTHVIHLAAMVGGL
Sbjct: 16 AIKKVVETTEKR-----DDEKWVFIGSKDCDLENLEETRELFESVKPTHVIHLAAMVGGL 70
Query: 317 FHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPP 496
FHN+AHNL FFR+NM+INDN+L CH+++V K VSCLSTCIFPDKT+YPIDETMVH GPP
Sbjct: 71 FHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLSTCIFPDKTSYPIDETMVHLGPP 130
Query: 497 HSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIRRMD 676
H SNFGYSYAKRMIDVLN+GY + +G +TSV+PCNVFGPHDN++L+S HV+PALI +
Sbjct: 131 HDSNFGYSYAKRMIDVLNKGYAQEHGRKYTSVVPCNVFGPHDNYNLQSGHVLPALIHKAY 190
Query: 677 DAMQKGDP 700
A + G P
Sbjct: 191 VAQRDGTP 198
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1
Query: 685 AKR*SHVXQ*WGSGKPLRQFIYSLXLGELFI 777
A+R Q +GSG PLRQFIYS+ L LFI
Sbjct: 192 AQRDGTPLQVYGSGTPLRQFIYSIDLARLFI 222
>AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
protein.
Length = 315
Score = 273 bits (670), Expect = 8e-74
Identities = 123/188 (65%), Positives = 148/188 (78%)
Frame = +2
Query: 137 AIKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDKTQTEALFAKHKPTHVIHLAAMVGGL 316
AIK V+E ++ D E W+F GSKD DL + +T LF KPTHVIHLAAMVGGL
Sbjct: 16 AIKKVVETTEKR-----DDEKWVFIGSKDCDLENLEETRELFESVKPTHVIHLAAMVGGL 70
Query: 317 FHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPP 496
FHN+AHNL FFR+NM+INDN+L CH+++V K VSCLSTCIFPDKT+YPIDETMVH GPP
Sbjct: 71 FHNLAHNLQFFRKNMAINDNVLALCHEFDVIKCVSCLSTCIFPDKTSYPIDETMVHLGPP 130
Query: 497 HSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGPHDNFSLKSSHVIPALIRRMD 676
H SNFGYSYAKRMIDVLN+GY + +G +TSV+PCNVFGPHDN++L+S HV+PALI +
Sbjct: 131 HDSNFGYSYAKRMIDVLNKGYAQEHGRKYTSVVPCNVFGPHDNYNLQSGHVLPALIHKAY 190
Query: 677 DAMQKGDP 700
A + G P
Sbjct: 191 VAQRDGTP 198
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +1
Query: 685 AKR*SHVXQ*WGSGKPLRQFIYSLXLGELFI 777
A+R Q +GSG PLRQFIYS+ L LFI
Sbjct: 192 AQRDGTPLQVYGSGTPLRQFIYSIDLARLFI 222
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
D+ D+ E +F+++K +IHLAA+ + ++A L ++ N+ + N++Q C KYNV
Sbjct: 66 DVCDEAALEKVFSENKFDGIIHLAALKA-VGESVAKPLQYYSNNLVASLNLIQMCLKYNV 124
Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
K V S ++ + PI E
Sbjct: 125 KNFVFSSSATVYGPPSELPITE 146
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
D+ D+ E +F+++K +IHLAA+ + ++A L ++ N+ + N++Q C KYNV
Sbjct: 64 DVCDEAALEKVFSENKFDGIIHLAALKA-VGESVAKPLQYYSNNLVASLNLIQMCLKYNV 122
Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
K V S ++ + PI E
Sbjct: 123 KNFVFSSSATVYGPPSELPITE 144
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 566 SYGCMFTSVIPCNVFGPHDNFSLKSSHVIPAL---IRRMDDAMQK--GDPTFXSDGEAXN 730
S G +FT ++ C +G D F+ S V+ A+ I+ + A++ G TF N
Sbjct: 1671 SMGRIFTGIVECGAWGCFDEFNRLDSTVLSAVSMQIQTIQGAIKSRAGSCTFGGKNVQVN 1730
Query: 731 HSDSLFIHXISASCSFG 781
+ ++F+ A +G
Sbjct: 1731 PNSAIFVTLNPAGKGYG 1747
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 43 SRGQEATSIYNYKDE*RKCCSCDRRLRTSWSSNKDSYR 156
S+G++ I ++ +E KC CD RT W ++ YR
Sbjct: 60 SQGRQRFCIVSHLEEQTKCFYCDS--RTEWKPQREPYR 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,004,663
Number of Sequences: 27780
Number of extensions: 414744
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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