Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0019
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    24   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.3  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 253 FCLSFISEVAILGTAKYPRLTI--IITISFLSV-ALYNCLYCL 134
           F +  + +  + GTA+ PRL +  I+ + F  V  LY  +  +
Sbjct: 109 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 151


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 320 HNMAHNLDFFRENMSINDNILQACHKYNVKKVVS 421
           + +  ++DF + ++S  D     C+K  V+KV+S
Sbjct: 180 YGLEMSVDFIKGSISNIDGAEDHCNKTAVRKVIS 213


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 263 AKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVS 421
           A+H         A VG LF +M +  DF+ E  SIN+  L+ C ++ + +V+S
Sbjct: 773 ARHHDDLYSQSYAEVGVLFASMPNFADFYSEE-SINNQGLE-CLRF-LNEVIS 822


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,611
Number of Sequences: 438
Number of extensions: 5369
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)