Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0019
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73250.1 68414.m08477 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 105 5e-23
At1g17890.3 68414.m02214 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 104 6e-23
At1g17890.2 68414.m02213 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 104 6e-23
At1g17890.1 68414.m02215 GDP-4-keto-6-deoxy-D-mannose-3,5-epimer... 104 6e-23
At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase fam... 46 3e-05
At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase fam... 45 5e-05
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 45 5e-05
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam... 42 4e-04
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam... 41 8e-04
At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase fam... 39 0.004
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 39 0.004
At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase fam... 38 0.008
At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative / UDP... 37 0.014
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 34 0.13
At1g63000.1 68414.m07114 expressed protein 33 0.22
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP... 33 0.29
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP... 31 0.89
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 31 0.89
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 30 1.6
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 30 2.1
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 30 2.1
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 29 3.6
At4g19280.1 68417.m02842 hypothetical protein 28 6.3
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 6.3
At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar ... 28 6.3
At5g52860.1 68418.m06561 ABC transporter family protein 28 8.3
>At1g73250.1 68414.m08477
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1) identical to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 323
Score = 105 bits (251), Expect = 5e-23
Identities = 57/184 (30%), Positives = 95/184 (51%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DL + E+ F++ KP +VI AA VGG+ N + DF N+ I N++ + +++ V
Sbjct: 53 DLTRQADVESFFSQEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGV 112
Query: 407 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 586
KK++ S+CI+P PI E+ + +N Y+ AK + Y +G
Sbjct: 113 KKLLFLGSSCIYPKFAPQPIPESALLTASLEPTNEWYAIAKIAGIKTCQAYRIQHGWDAI 172
Query: 587 SVIPCNVFGPHDNFSLKSSHVIPALIRRMDDAMQKGDPTFXSDGEAXNHSDSLFIHXISA 766
S +P N++GP+DNF ++SHV+PAL+RR +A G G + L + ++
Sbjct: 173 SGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLAD 232
Query: 767 SCSF 778
+C F
Sbjct: 233 ACVF 236
>At1g17890.3 68414.m02214
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 104 bits (250), Expect = 6e-23
Identities = 57/184 (30%), Positives = 94/184 (51%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DL ++ E+ FA KP +VI AA VGG+ N + DF N+ I N++ + + + V
Sbjct: 48 DLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGV 107
Query: 407 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 586
KK++ S+CI+P PI E+ + GP +N Y+ AK + + Y +
Sbjct: 108 KKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAI 167
Query: 587 SVIPCNVFGPHDNFSLKSSHVIPALIRRMDDAMQKGDPTFXSDGEAXNHSDSLFIHXISA 766
S +P N++G +DNF ++SHV+PAL+RR +A G + L + ++
Sbjct: 168 SGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD 227
Query: 767 SCSF 778
+C F
Sbjct: 228 ACVF 231
>At1g17890.2 68414.m02213
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 320
Score = 104 bits (250), Expect = 6e-23
Identities = 57/184 (30%), Positives = 94/184 (51%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DL ++ E+ FA KP +VI AA VGG+ N + DF N+ I N++ + + + V
Sbjct: 48 DLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGV 107
Query: 407 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 586
KK++ S+CI+P PI E+ + GP +N Y+ AK + + Y +
Sbjct: 108 KKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAI 167
Query: 587 SVIPCNVFGPHDNFSLKSSHVIPALIRRMDDAMQKGDPTFXSDGEAXNHSDSLFIHXISA 766
S +P N++G +DNF ++SHV+PAL+RR +A G + L + ++
Sbjct: 168 SGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD 227
Query: 767 SCSF 778
+C F
Sbjct: 228 ACVF 231
>At1g17890.1 68414.m02215
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase,
putative similar to
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1)GI:6016479 from [Arabidopsis thaliana]
Length = 328
Score = 104 bits (250), Expect = 6e-23
Identities = 57/184 (30%), Positives = 94/184 (51%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DL ++ E+ FA KP +VI AA VGG+ N + DF N+ I N++ + + + V
Sbjct: 56 DLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYTHGV 115
Query: 407 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFT 586
KK++ S+CI+P PI E+ + GP +N Y+ AK + + Y +
Sbjct: 116 KKLLFLGSSCIYPKFAPQPIPESALLTGPLEPTNEWYAIAKIAGIKMCQAYRLQHQWDAI 175
Query: 587 SVIPCNVFGPHDNFSLKSSHVIPALIRRMDDAMQKGDPTFXSDGEAXNHSDSLFIHXISA 766
S +P N++G +DNF ++SHV+PAL+RR +A G + L + ++
Sbjct: 176 SGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHVDDLAD 235
Query: 767 SCSF 778
+C F
Sbjct: 236 ACVF 239
>At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 430
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GD+ D + LF THV+HLAA G+ + M + + N++ N+L+ C
Sbjct: 148 EGDINDAALLKKLFEVVPFTHVMHLAAQ-AGVRYAMENPSSYVHSNIAGFVNLLEVCKSA 206
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 207 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYGL 262
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 263 SLTGLRFFTVYGP 275
>At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 437
Score = 45.2 bits (102), Expect = 5e-05
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GD+ D LF THV+HLAA G+ + M + + N++ N+L+ C
Sbjct: 154 EGDINDVELLRKLFKIVSFTHVMHLAAQ-AGVRYAMENPSSYVHSNIAGFVNLLEICKSV 212
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 213 NPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASL----YAATKKAGEEIAHTYNHIYGL 268
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 269 SLTGLRFFTVYGP 281
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 45.2 bits (102), Expect = 5e-05
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GD+ D + + LF THV+HLAA G+ + M + + N++ N+L+ C
Sbjct: 149 EGDINDLSLLKKLFEVVPFTHVMHLAAQ-AGVRYAMENPGSYVHSNIAGFVNLLEVCKSA 207
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 208 NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL----YAATKKAGEEIAHTYNHIYGL 263
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 264 SLTGLRFFTVYGP 276
>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 429
Score = 42.3 bits (95), Expect = 4e-04
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GDL D LF THV+HLAA G+ + + + + N++ N+L+ C
Sbjct: 145 EGDLNDAKLLAKLFDVVAFTHVMHLAAQ-AGVRYALENPQSYVHSNIAGLVNLLEICKAA 203
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ P E+ + P Y+ K+ + + YN YG
Sbjct: 204 NPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASL----YAATKKAGEEITHTYNHIYGL 259
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 260 AITGLRFFTVYGP 272
>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam
profile: PF01370 NAD dependent epimerase/dehydratase
family
Length = 460
Score = 41.1 bits (92), Expect = 8e-04
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GDL D LF TH++HLAA G+ + M + + N++ N+L+
Sbjct: 169 EGDLNDGPLLRKLFDVVPFTHILHLAAQ-AGVRYAMKNPQSYIASNIAGFVNLLEVAKAA 227
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ T P E + P Y+ K+ + + YN YG
Sbjct: 228 NPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASL----YAATKKAGEEIAHTYNHIYGL 283
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 284 SLTGLRFFTVYGP 296
>At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase family
protein similar to sugar epimerase BlmG from
Streptomyces verticillus GI:9937230; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 377
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +2
Query: 281 HVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNVKKVVSCLSTCIFPDKTTY 460
HV +LAA +GG+ +++ N I+ N+++A +K+ S CI+P+
Sbjct: 94 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQL 153
Query: 461 PIDETMVHNGP--PHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCNVFGP 616
+ P Y K + L + YN+ +G N++GP
Sbjct: 154 ETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 207
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 403
GDLR+K E LF+K + VIH A + + ++ + +F N+ N+ + KYN
Sbjct: 67 GDLRNKGDIEKLFSKQRFDAVIHFAGL-KAVGESVENPRRYFDNNLVGTINLYETMAKYN 125
Query: 404 VKKVVSCLSTCIFPDKTTYPIDE 472
K +V S ++ P E
Sbjct: 126 CKMMVFSSSATVYGQPEKIPCME 148
>At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 436
Score = 37.9 bits (84), Expect = 0.008
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 221 DGDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKY 400
+GD+ D LF THV+HLAA G+ + M + + N++ N+L+
Sbjct: 153 EGDINDAVLLRKLFDVVLFTHVMHLAAQ-AGVRYAMQNPGSYVNSNIAGFVNLLEVSKSA 211
Query: 401 NVK-KVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGC 577
N + +V S+ ++ + P E + P Y+ K+ + + YN YG
Sbjct: 212 NPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL----YAATKKAGEGIAHTYNHIYGL 267
Query: 578 MFTSVIPCNVFGP 616
T + V+GP
Sbjct: 268 SLTGLRFFTVYGP 280
>At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative strong similarity to SP|Q42605 [GI:1143392]
from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327
(1), 27-34 (1996))
Length = 351
Score = 37.1 bits (82), Expect = 0.014
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYN 403
GDLR+K E LF+ + VIH A + + ++ + +F N+ N+ + KYN
Sbjct: 67 GDLRNKGDIEKLFSNQRFDAVIHFAGL-KAVGESVGNPRRYFDNNLVGTINLYETMAKYN 125
Query: 404 VKKVVSCLSTCIFPDKTTYPIDE 472
K +V S ++ P E
Sbjct: 126 CKMMVFSSSATVYGQPEIVPCVE 148
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 33.9 bits (74), Expect = 0.13
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 397
G L D+ A KPTHV + A + G + +H + R N++ + C +
Sbjct: 414 GRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRE 473
Query: 398 YNVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFG--YSYAKRMIDVLNRGYN 562
N +++ + CIF T+P + + FG YS K M++ L R ++
Sbjct: 474 -NDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFD 529
>At1g63000.1 68414.m07114 expressed protein
Length = 301
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 397
G L+D+ A KP+HV + A + G + +H ++ R N++ + C +
Sbjct: 44 GRLQDRQSIVADIESVKPSHVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICRE 103
Query: 398 YNVKKVVSCLSTCIFPDKTTYPIDETM--VHNGPPHSSNFGYSYAKRMIDVLNRGY 559
+ +++ + CIF + +P+ + P+ + YS K M++ L + Y
Sbjct: 104 KGL-VLINYATGCIFEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNY 158
>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
Length = 348
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DLRDK E +F++ K V+H A + + ++A L ++ N+ +L+ +
Sbjct: 63 DLRDKPALEKVFSETKFDAVMHFAGL-KAVGESVAKPLLYYNNNLIATITLLEVMAAHGC 121
Query: 407 KKVVSCLSTCIF 442
KK+V S ++
Sbjct: 122 KKLVFSSSATVY 133
>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 350
Score = 31.1 bits (67), Expect = 0.89
Identities = 27/114 (23%), Positives = 48/114 (42%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DLRD+ E +F++ K VIH A + + ++ L ++ N+ +L+ +Y
Sbjct: 63 DLRDRPALEKIFSETKFDAVIHFAGL-KAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGC 121
Query: 407 KKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNES 568
K +V S ++ P E P S+ Y K I+ + R + S
Sbjct: 122 KNLVFSSSATVYGWPKEVPCTEE-----SPISATNPYGRTKLFIEEICRDVHRS 170
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +2
Query: 227 DLRDKTQTEALFAKHKPTHVIHLAAMVGGLFHNMAHNLDFFRENMSINDNILQACHKYNV 406
DLRD++ E +F++ K VIH A + + ++ L ++ N+ +L+ ++
Sbjct: 64 DLRDRSALEKIFSETKFDAVIHFAGL-KAVGESVEKPLLYYNNNLVGTITLLEVMAQHGC 122
Query: 407 KKVVSCLSTCIFPDKTTYPIDE 472
K +V S ++ P E
Sbjct: 123 KNLVFSSSATVYGSPKEVPCTE 144
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +2
Query: 425 LSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYNESYGCMFTSVIPCN 604
L C DKT Y +D + P H S F ++ K + + N Y+ G ++
Sbjct: 7 LDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSN--YSSMDGVLYCKTHFEQ 64
Query: 605 VFGPHDNFS 631
+F NFS
Sbjct: 65 LFKESGNFS 73
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 397
G L D+ A KP+HV + A + G + +H + R N++ + C +
Sbjct: 411 GRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRE 470
Query: 398 YNVKKVVSCLSTCIFPDKTTYPIDETM--VHNGPPHSSNFGYSYAKRMIDVLNRGYN 562
N +++ + CIF +P + P+ + YS K M++ L R ++
Sbjct: 471 -NDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFD 526
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Frame = +2
Query: 224 GDLRDKTQTEALFAKHKPTHVIHLAAMVG--GLFHNMAHNLDFFRENMSINDNILQACHK 397
G L D++ KPTHV + A + G + +H + R N++ + C +
Sbjct: 416 GRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCRE 475
Query: 398 YNVKKVVSCLSTCIFPDKTTYPIDETM--VHNGPPHSSNFGYSYAKRMIDVLNRGYN 562
+ + +++ + CIF +P + P+ + YS K M++ L + Y+
Sbjct: 476 HGL-LMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYD 531
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting
protein 12 (TRIP12) {Homo sapiens}; contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00514: Armadillo/beta-catenin-like repeat
Length = 1502
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 404 VKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHSSNFGYSYAKRMIDVLNRGYN--ESYGC 577
+K V+ L D E+ + N P FG MI VLN G N SYGC
Sbjct: 404 LKLVIELLPASPVEDNQLASEKESFLVNQPDLLQQFGRDMLPVMIQVLNSGANVYVSYGC 463
Query: 578 M 580
+
Sbjct: 464 L 464
>At4g19280.1 68417.m02842 hypothetical protein
Length = 254
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 365 INDNILQACHKYNVKKVVSCLSTCIFPDKTTYPIDETM---VHNGPPHS 502
I NI + C V ++ CLSTC + KT + + + + + N PP S
Sbjct: 29 IVQNIERQCFN-TVLSIIICLSTCFYFSKTCFSVFKLLLVCLFNPPPFS 76
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1)
(p125Nap1) (Membrane-associated protein HEM-2)
(Swiss-Prot:P55161) [Rattus norvegicus]
Length = 1339
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 469 INRICCLIRKYACRETRYNLLYI 401
++R+CCL+RKY Y L Y+
Sbjct: 478 MDRLCCLVRKYISAARGYALSYL 500
>At2g02400.1 68415.m00180 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
Eucalyptus gunnii [GI:2058311]
Length = 318
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = +2
Query: 374 NILQACHKYNVKKVV--SCLSTCI----FPDKTTYPIDETMVHN-GPPHSSNFGYSYAKR 532
N+L+A ++NV++VV S +S + +P+K P+DE+ + S Y +K
Sbjct: 106 NVLEAAKRFNVRRVVITSSISALVPNPNWPEKV--PVDESSWSDLDFCKSRQKWYPISKT 163
Query: 533 MIDVLNRGYNESYGCMFTSVIPCNVFGP 616
+ + ++E +G ++ P GP
Sbjct: 164 LAEKAAWEFSEKHGTNIVTIHPSTCLGP 191
>At5g52860.1 68418.m06561 ABC transporter family protein
Length = 589
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 369 FIDIFSLKKSKLCAIL*NSPPTIAAKCITWV 277
F+ FS+ K L A+L N +A+KC+ W+
Sbjct: 502 FMYFFSMYKYALDALLINEYSCLASKCLVWL 532
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,888
Number of Sequences: 28952
Number of extensions: 376165
Number of successful extensions: 874
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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