Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0018
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    35   0.014
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    31   0.23 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.7  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   8.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 575 NXGLKDVVLALKWVQRNXDTFGGDPNNVTIFGXSSG 682
           N G  D  L L+W  ++ ++FGG+  N+ + G S+G
Sbjct: 164 NFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAG 199


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 602 ALKWVQRNXDTFGGDPNNVTIFGXSSGG----VMVHXMMFSP 715
           AL +   N DT G +PN + + G S+GG    V+ H +  SP
Sbjct: 157 ALLYCYENADTLGINPNKIAVGGSSAGGNIAAVLSHKVAASP 198


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 594  TSFSPQFPGAVKSLIERNPNAPSXKPH 514
            T  +PQ P A  S I  +PN P   P+
Sbjct: 958  TPVAPQSPVAAASRISSSPNMPPSNPY 984


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 278 KEWQGEEAKFCHWRPXXI*VNNXRVRGM 195
           +EW G+   FC W+     ++N  V+G+
Sbjct: 250 EEWTGQADLFCEWQEYMDGLHNFPVQGV 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,308
Number of Sequences: 5004
Number of extensions: 41849
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)