Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0018
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0411 + 17366559-17367497                                         30   2.3  
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    30   2.3  
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340...    29   3.9  
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597...    28   9.1  

>09_04_0411 + 17366559-17367497
          Length = 312

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 548 SINDFTAPGNX---GLKDVVLALKWVQRNXDTF---GGDPNNVTIFGXSSGGVMVHXMM 706
           S+N   AP N    G  D   AL+W     D +    GD   V + G S+GG +VH M+
Sbjct: 111 SVNYRLAPENPLPAGYDDSWAALQWAVSAQDDWIAEHGDTERVFVAGDSAGGNIVHEML 169


>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 584 LKDVVLALKWVQRNXDTFGGDPNNVTIFGXSSG 682
           + D    + +V  N  ++GGDPN + + G S+G
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAG 226


>02_01_0473 -
           3403547-3404241,3404455-3404983,3405299-3405477,
           3405868-3405952,3406136-3406482,3407061-3407159,
           3408135-3408636
          Length = 811

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 622 KR*YIWR-RPKQCNNIWX*FWRCHGTXYDVFTNGNW 726
           KR  IWR R  +   IW   W  HG   +V    NW
Sbjct: 460 KRGLIWRVRDGRTTKIWRNRWVAHGEKVEVIQKKNW 495


>03_04_0169 -
           17959262-17959304,17959441-17959532,17959682-17959759,
           17959938-17960075,17960174-17960302,17960556-17960685,
           17960797-17960974,17961177-17961315,17961399-17961488,
           17961633-17961794,17961966-17962130,17962250-17962387,
           17962827-17963006,17963405-17963533,17963878-17964113,
           17964233-17964395,17965260-17965628,17965724-17965828
          Length = 887

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 581 GLKDVVLA-LKWVQRNXDTFGGDPNNVTIFGXSSG-GVMVHXMMFSPMATGL 730
           GL D +LA L WV+ N     GDP    +    SG  V +  MM + +  GL
Sbjct: 76  GLWDEILAALTWVEGNMGAVLGDPRRPLLLSVRSGAAVSMPGMMDTVLNLGL 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,580
Number of Sequences: 37544
Number of extensions: 258686
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)