Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0018
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02410.1 68416.m00228 hypothetical protein weak similarity to...    33   0.27 
At5g15860.2 68418.m01856 expressed protein                             31   0.82 
At5g15860.1 68418.m01855 expressed protein                             31   0.82 
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar...    29   4.4  

>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
           kynurenine formamidase [Mus musculus] GI:21552719
          Length = 422

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 584 LKDVVLALKWVQRNXDTFGGDPNNVTIFGXSSGGVMVHXMMF 709
           + D    + +V  N   FGGDPN + + G S+G  +    +F
Sbjct: 200 VSDAAQGISFVCNNISAFGGDPNRIYLMGQSAGAHISSCALF 241


>At5g15860.2 68418.m01856 expressed protein
          Length = 299

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 590 DVVLALKWVQRNXDTFGGDPNNVTIFGXSSG 682
           D    + +V  N   FGGDPN + + G S+G
Sbjct: 207 DASQGISFVCNNISAFGGDPNRIYLMGQSAG 237


>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 590 DVVLALKWVQRNXDTFGGDPNNVTIFGXSSG 682
           D    + +V  N   FGGDPN + + G S+G
Sbjct: 207 DASQGISFVCNNISAFGGDPNRIYLMGQSAG 237


>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
           Acylamino-acid-releasing enzyme (EC 3.4.19.1)
           (Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
           (Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
           nonconsensus TT and CT acceptor splice sites.
          Length = 764

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 569 PGNXGLKDVVLALKWVQRNXDTFGGDPNNVTIFGXSSGGVM 691
           PG  G +DV   L  V    +    DP+ +T+ G S GG +
Sbjct: 583 PGKVGSQDVKDCLLAVDHAIEMGIADPSRITVLGGSHGGFL 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,342
Number of Sequences: 28952
Number of extensions: 216541
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)