Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0017
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   7.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 601 NRFQGRYQLPA 633
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 562 QNQAYYPIRRLVSNRFQGRYQ 624
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 697 VGQHADXTLNLGQVASGHHGGWL 629
           VGQ  D T ++  V   + GGWL
Sbjct: 738 VGQGQDMTYSVQGVGVVNAGGWL 760


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,283
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)