Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0017
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 217 9e-57
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 217 9e-57
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 216 2e-56
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 216 2e-56
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 216 2e-56
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 216 2e-56
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 204 5e-53
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 113 2e-25
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 113 2e-25
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 111 4e-25
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 111 4e-25
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 110 9e-25
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 110 9e-25
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 110 9e-25
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 110 9e-25
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 110 1e-24
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 80 1e-15
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 80 2e-15
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 32 0.39
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 29 2.7
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 29 2.7
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR... 29 4.7
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR... 29 4.7
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 6.3
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 217 bits (529), Expect = 9e-57
Identities = 96/115 (83%), Positives = 103/115 (89%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVISA KAYHEQLSV ITNA FEPA+ M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
NAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+SN TA
Sbjct: 329 NAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTA 383
Score = 202 bits (494), Expect = 2e-52
Identities = 93/117 (79%), Positives = 105/117 (89%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++D EA Y
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+LDIERPTYTNLNRLI QI+SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHF 267
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 724 ARLDHKFDLMYXKRAFVHWYLRXGM 798
+R+DHKFDLMY KRAFVHWY+ GM
Sbjct: 389 SRIDHKFDLMYAKRAFVHWYVGEGM 413
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 217 bits (529), Expect = 9e-57
Identities = 96/115 (83%), Positives = 103/115 (89%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVISA KAYHEQLSV ITNA FEPA+ M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
NAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+SN TA
Sbjct: 329 NAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTA 383
Score = 202 bits (494), Expect = 2e-52
Identities = 93/117 (79%), Positives = 105/117 (89%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++D EA Y
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+LDIERPTYTNLNRLI QI+SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHF 267
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 724 ARLDHKFDLMYXKRAFVHWYLRXGM 798
+R+DHKFDLMY KRAFVHWY+ GM
Sbjct: 389 SRIDHKFDLMYAKRAFVHWYVGEGM 413
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 216 bits (527), Expect = 2e-56
Identities = 95/115 (82%), Positives = 105/115 (91%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVISA KA+HEQLSVA ITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
NAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+SN+T+
Sbjct: 329 NAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Score = 197 bits (480), Expect = 8e-51
Identities = 87/117 (74%), Positives = 105/117 (89%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++D EA Y
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+L+IERPTYTNLNRL+ Q++SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 267
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 724 ARLDHKFDLMYXKRAFVHWYLRXGM 798
+R+DHKFDLMY KRAFVHWY+ GM
Sbjct: 389 SRIDHKFDLMYAKRAFVHWYVGEGM 413
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 216 bits (527), Expect = 2e-56
Identities = 95/115 (82%), Positives = 105/115 (91%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVISA KA+HEQLSVA ITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
NAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+SN+T+
Sbjct: 329 NAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Score = 197 bits (480), Expect = 8e-51
Identities = 87/117 (74%), Positives = 105/117 (89%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++D EA Y
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+L+IERPTYTNLNRL+ Q++SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 267
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 216 bits (527), Expect = 2e-56
Identities = 95/115 (82%), Positives = 105/115 (91%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVISA KA+HEQLSVA ITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
NAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+SN+T+
Sbjct: 329 NAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Score = 196 bits (479), Expect = 1e-50
Identities = 87/117 (74%), Positives = 104/117 (88%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++D EA Y
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+L IERPTYTNLNRL+ Q++SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 267
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 724 ARLDHKFDLMYXKRAFVHWYLRXGM 798
+R+DHKFDLMY KRAFVHWY+ GM
Sbjct: 389 SRIDHKFDLMYAKRAFVHWYVGEGM 413
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 216 bits (527), Expect = 2e-56
Identities = 95/115 (82%), Positives = 105/115 (91%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVISA KA+HEQLSVA ITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
NAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQR VCM+SN+T+
Sbjct: 329 NAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383
Score = 196 bits (479), Expect = 1e-50
Identities = 87/117 (74%), Positives = 104/117 (88%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++D EA Y
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+L IERPTYTNLNRL+ Q++SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHF 267
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 724 ARLDHKFDLMYXKRAFVHWYLRXGM 798
+R+DHKFDLMY KRAFVHWY+ GM
Sbjct: 389 SRIDHKFDLMYAKRAFVHWYVGEGM 413
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 204 bits (498), Expect = 5e-53
Identities = 89/115 (77%), Positives = 98/115 (85%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
L +YAPVIS+ KAYHEQ SV IT + FEP+N M KCDPRHGKYMACC++YRGDVVP DV
Sbjct: 269 LSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDV 328
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRXVCMLSNTTA 706
N A+ IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQR VCM+SN TA
Sbjct: 329 NTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTA 383
Score = 196 bits (477), Expect = 2e-50
Identities = 89/117 (76%), Positives = 103/117 (88%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
SLL+ERLSVD+GKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D ++D EA Y
Sbjct: 151 SLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIY 210
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DICRR+LDIERPTY+NLNRLI Q +SS+T SLR DGA NVD+TEFQTNLVPYPR HF
Sbjct: 211 DICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHF 267
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 724 ARLDHKFDLMYXKRAFVHWYLRXGM 798
+R+DHKFDLMY KRAFVHWY+ GM
Sbjct: 389 SRIDHKFDLMYSKRAFVHWYVGEGM 413
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 113 bits (271), Expect = 2e-25
Identities = 49/117 (41%), Positives = 76/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 150 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 209
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T SLR G N DL + NL+P+PR HF
Sbjct: 210 DICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHF 266
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/93 (30%), Positives = 48/93 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 268 MVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEV 327
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPT 640
+ I ++ K + FV+W P K + PPT
Sbjct: 328 DEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 381 RVSEQFTAMFRRKAFLHWYTGEGM 404
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 113 bits (271), Expect = 2e-25
Identities = 49/117 (41%), Positives = 76/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 150 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 209
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T SLR G N DL + NL+P+PR HF
Sbjct: 210 DICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHF 266
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/92 (30%), Positives = 47/92 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 268 MVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEV 327
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPP 637
+ I I+ K + FV+W P K + PP
Sbjct: 328 DEQILNIQNKNSSYFVEWIPNNVKSSVCDIPP 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 381 RVSEQFTAMFRRKAFLHWYTGEGM 404
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 111 bits (268), Expect = 4e-25
Identities = 48/117 (41%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + PT+ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/87 (29%), Positives = 45/87 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + LSV +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGI 622
+ + I+ K + FV+W P K +
Sbjct: 327 DEQMMNIQNKNSSYFVEWIPNNVKSSV 353
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 111 bits (268), Expect = 4e-25
Identities = 48/117 (41%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + PT+ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/93 (29%), Positives = 47/93 (50%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + LSV +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPT 640
+ + ++ K + FV+W P K + PT
Sbjct: 327 DEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPT 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 110 bits (265), Expect = 9e-25
Identities = 48/117 (41%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/93 (29%), Positives = 48/93 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPT 640
+ + ++ K + FV+W P K + PPT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 110 bits (265), Expect = 9e-25
Identities = 48/117 (41%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/93 (29%), Positives = 48/93 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPT 640
+ + ++ K + FV+W P K + PPT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 110 bits (265), Expect = 9e-25
Identities = 48/117 (41%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/93 (29%), Positives = 48/93 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPT 640
+ + ++ K + FV+W P K + PPT
Sbjct: 327 DEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 110 bits (265), Expect = 9e-25
Identities = 48/117 (41%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGI 622
+ + ++ K + FV+W P K +
Sbjct: 327 DEQMINVQNKNSSYFVEWIPNNVKSSV 353
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 110 bits (264), Expect = 1e-24
Identities = 47/117 (40%), Positives = 75/117 (64%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAXY 186
+LL+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++D EA Y
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALY 208
Query: 187 DICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF 357
DIC R L + P++ +LN LI +S +T LR G N DL + NL+P+PR HF
Sbjct: 209 DICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/93 (29%), Positives = 48/93 (51%)
Frame = +2
Query: 362 LVTYAPVISAXKAYHEQLSVAXITNACFEPANXMVKCDPRHGKYMACCMLYRGDVVPXDV 541
+V +AP+ S + L+V +T ++ N M DPRHG+Y+ ++RG + +V
Sbjct: 267 MVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEV 326
Query: 542 NAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPT 640
+ + ++ K + FV+W P K + PPT
Sbjct: 327 DEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 727 RLDHKFDLMYXKRAFVHWYLRXGM 798
R+ +F M+ ++AF+HWY GM
Sbjct: 380 RVSEQFTAMFRRKAFLHWYTGEGM 403
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 80.2 bits (189), Expect = 1e-15
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAX 183
S L+E L+ Y KK ++++P + S VV+PYNS+LT ++DC ++D A
Sbjct: 151 SYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
Query: 184 YDICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF-A 360
I L + PT+ N L+ ++S+ T +LR G N DL +L+P PR HF
Sbjct: 211 NRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLM 270
Query: 361 TGH 369
TG+
Sbjct: 271 TGY 273
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Frame = +2
Query: 341 TPVXTLPLVTYAPVISAXKA-YHEQLSVAXITNACFEPANXMVKCDPRH-----GKYMAC 502
TP + Y P+ +A + +V + + N MV R+ KY++
Sbjct: 263 TPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISI 322
Query: 503 CMLYRGDVVPXDVNAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTV 643
+ +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V
Sbjct: 323 LNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYV 369
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 79.8 bits (188), Expect = 2e-15
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +1
Query: 7 SLLMERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDXEAX 183
S L+E L+ Y KK ++++P + S VV+PYNS+LT ++DC ++D A
Sbjct: 151 SYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
Query: 184 YDICRRNLDIERPTYTNLNRLIGQIVSSITXSLRXDGAXNVDLTEFQTNLVPYPRXHF-A 360
I L + PT+ N L+ ++S+ T +LR G N DL +L+P PR HF
Sbjct: 211 GRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLM 270
Query: 361 TGH 369
TG+
Sbjct: 271 TGY 273
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Frame = +2
Query: 341 TPVXTLPLVTYAPVISAXKA-YHEQLSVAXITNACFEPANXMVKCDPRH-----GKYMAC 502
TP + Y P+ +A + +V + + N MV R+ KY++
Sbjct: 263 TPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISI 322
Query: 503 CMLYRGDVVPXDVNAAIXTIKTKRTIQFVDWCPTGFKVGINYQPPTV 643
+ +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V
Sbjct: 323 LNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYV 369
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 550 GRVHIXGY-DVTTVQHTASHVLAMTGVAFHHXVGGLE 443
GRV I Y D + + H H L TG+ HH G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1085
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 315 RVPD*LGALPPYXLCHWSRTRQSSLPXR 398
++P+ + LPP L HW R + SLP +
Sbjct: 574 QIPEDMEYLPPLRLLHWDRYPRKSLPTK 601
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 631 LVVDTDLETGWTPVDELDSTLGFDGXDGRVHIXGY 527
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 306 GPHRVPD*LGALPPYXLCHWSRTRQSSLPXR 398
G ++P+ + +PP L HW + SLP R
Sbjct: 569 GTLQIPEDMEYIPPVRLLHWQNYPRKSLPQR 599
>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 306 GPHRVPD*LGALPPYXLCHWSRTRQSSLPXR 398
G ++P+ + +PP L HW + SLP R
Sbjct: 569 GTLQIPEDMEYIPPVRLLHWQNYPRKSLPQR 599
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 515 RGDVVPXDVNAAIXTIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 658
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,349,922
Number of Sequences: 28952
Number of extensions: 322234
Number of successful extensions: 981
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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