Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0016
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.82 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 619 SRIXNGVVXTWIA*RRVYESSLNV 690
           S   NG+V TWIA  R   +SL +
Sbjct: 793 SHTPNGIVKTWIAHDRYLPNSLRI 816


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 539 NSLHYKDYKRTALANXPASIEMRFXNLY 456
           N   Y   K+ A+   PA +++RF NL+
Sbjct: 169 NGETYLRIKKHAVKFNPAKVKLRFENLF 196


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 380 EITPSASSSLNKVLKAQYTDSVWLRRKDWXS 472
           EIT S+ S +    K  Y  SVW    DW S
Sbjct: 335 EITSSSCSYMAHE-KLSYAFSVWRMEDDWNS 364


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 725 VIVYNIHLXTE*TFKLLS*TRRYAIHV 645
           V+V N+H  +  T K+    +R  IH+
Sbjct: 326 VVVLNVHFRSPQTHKMAPWVKRVFIHI 352


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 725 VIVYNIHLXTE*TFKLLS*TRRYAIHV 645
           V+V N+H  +  T K+    +R  IH+
Sbjct: 326 VVVLNVHFRSPQTHKMAPWVKRVFIHI 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,950
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)