Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0015
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.064
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 323 NVPCGTSGGVLIYFERIEVVNKQDPQSVLXMVRNFTXEYDRTXIFN 460
           +VPCGTSG  L +  ++ V  K+ P S        T E ++  +FN
Sbjct: 225 SVPCGTSGNPLEWTGQVTVRKKRKPYSKFQ-----TLELEKEFLFN 265


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +2

Query: 215 GGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFE 367
           GG     T++AGF     +        TTL  D  + VP    G   + F+
Sbjct: 784 GGTPGKYTAEAGFMSFYEICDFLHEDNTTLVWDNEQQVPFAYRGNQWVGFD 834


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 507 AWVWALXN*FSSWCTL 460
           AW+W L     +W TL
Sbjct: 464 AWIWLLWLLSQTWITL 479


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 507 AWVWALXN*FSSWCTL 460
           AW+W L     +W TL
Sbjct: 464 AWIWLLWLLSQTWITL 479


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 507 AWVWALXN*FSSWCTL 460
           AW+W L     +W TL
Sbjct: 464 AWIWLLWLLSQTWITL 479


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 507 AWVWALXN*FSSWCTL 460
           AW+W L     +W TL
Sbjct: 464 AWIWLLWLLSQTWITL 479


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,204
Number of Sequences: 336
Number of extensions: 3241
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)