Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0015
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...   141   6e-34

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score =  141 bits (341), Expect = 6e-34
 Identities = 71/175 (40%), Positives = 107/175 (61%)
 Frame = +2

Query: 173 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 352
           LH+V EGHVGVY+RGGALL   +  GFH+ +P +T ++ IQ       V+N+PCGT GGV
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGV 209

Query: 353 LIYFERIEVVNKQDPQSVLXMVRNFTXEYDRTXIFNKVHHELNQXCSAHTHARGIHXFV* 532
           +I F++IEVVN+   + V   + N+   YD+T I++K+HHE+NQ CSAH+  + ++  + 
Sbjct: 210 MISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHS-LQQVYIDLF 268

Query: 533 SNXREFTDQXXKRILMKWLQGLRVEAVXVAKPXIXTXNXENXELMGXXQSKLLIA 697
               E   +  +R   ++  G+ + +V V KP I      N ELM   ++K LIA
Sbjct: 269 DQIDETMKEAIQRDCTRYAPGIEIISVRVTKPNIPDSIRRNFELMEEERTKALIA 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,360
Number of Sequences: 37544
Number of extensions: 295886
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)