Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0015
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.096
SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.8  
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +2

Query: 575 LMKWLQGLRVEAVXVAKPXIXTXNXENXELMGXXQSKLLIA 697
           L+K   GL V AV V KP I      N E+M   ++KLLIA
Sbjct: 32  LVKMAPGLTVHAVRVTKPKIPETIRRNYEIMEGEKTKLLIA 72


>SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +2

Query: 176 HKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQT----TLQTDEVKNVPCGTS 343
           H V++GH+ + Y G A L  +    F    P     K I      TL  DE  N  C  S
Sbjct: 187 HMVDKGHMKIDYEGDAALEYSDYYDFSTSYPSDNPDKEIDETASGTLSVDETTNELCLPS 246

Query: 344 G 346
           G
Sbjct: 247 G 247


>SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 318

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 218 GALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNV 328
           GA +P TSQ G ++ + LL+  K  +   Q    KN+
Sbjct: 201 GAWIPSTSQVGEYLQVDLLSVMKINKVATQGQPTKNI 237


>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 365 QNKSTPHHLCHKAHF*LHQFVKLSEWLCMMLEVVSSC 255
           Q +ST  H+ + A    + FVK+++WL +M   V +C
Sbjct: 62  QRESTLWHVRYCARSYFNLFVKVADWLTVMFGDVRAC 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,849
Number of Sequences: 59808
Number of extensions: 357106
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)