Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0015
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   190   8e-49
U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protei...    29   4.2  
U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protei...    29   4.2  
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  190 bits (463), Expect = 8e-49
 Identities = 97/191 (50%), Positives = 125/191 (65%), Gaps = 1/191 (0%)
 Frame = +2

Query: 128 LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTL 304
           LA+ + A+ + +   +LHK+EEGHVGVYYRGGALL   +  G+HM IP LT+ K++Q TL
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTL 64

Query: 305 QTDEVKNVPCGTSGGVLIYFERIEVVNKQDPQSVLXMVRNFTXEYDRTXIFNKVHHELNQ 484
           QTDE  NVPCGTSGGVLIYF+RIEVVN     SV  +V+N+T +YDR  IFNKVHHE+NQ
Sbjct: 65  QTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEVNQ 124

Query: 485 XCSAHTHARGIHXFV*SNXREFTDQXXKRILMKWLQGLRVEAVXVAKPXIXTXNXENXEL 664
            CS HT  + ++  +     E      +  L+K   GL V+AV V KP I      N E 
Sbjct: 125 FCSVHT-LQEVYIDLFDKIDEEIKNALQEDLVKMAPGLYVQAVRVTKPKIPEAIRLNYEK 183

Query: 665 MGXXQSKLLIA 697
           M   ++KLL+A
Sbjct: 184 MEAEKTKLLVA 194


>U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protein
           1, isoform a protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/99 (21%), Positives = 41/99 (41%)
 Frame = +2

Query: 134 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 313
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 314 EVKNVPCGTSGGVLIYFERIEVVNKQDPQSVLXMVRNFT 430
            V +    +   V +  + +      DP + +  V N T
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT 149


>U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protein
           1, isoform b protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/99 (21%), Positives = 41/99 (41%)
 Frame = +2

Query: 134 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 313
           ++ L   V+V   +  V+E    V +R G L+P     G   +IP + ++  I   + + 
Sbjct: 51  LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110

Query: 314 EVKNVPCGTSGGVLIYFERIEVVNKQDPQSVLXMVRNFT 430
            V +    +   V +  + +      DP + +  V N T
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT 149


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 229 TSYKSSWFSHDDTTSNIIQSHSD 297
           TSY  +W ++DDT  +I++  +D
Sbjct: 107 TSYSITWMTYDDTLKSIVEYGTD 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,175
Number of Sequences: 27780
Number of extensions: 274576
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)