Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0014
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    34   0.025
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    31   0.23 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    29   0.54 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.9  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   3.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   3.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   6.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   8.7  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   8.7  

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 71  NSSHPGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPPPLVS 193
           +S + G   G P F P+  PP+  Y + + P+L  P P  S
Sbjct: 489 SSPYDGAQSGSPQFPPFELPPHN-YSQAQSPNLATPSPSFS 528


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
 Frame = +2

Query: 155 KDPHLPAPPPLVSEKNTVIVKHDAKQIHLEQNHQYPS----KPRNDPSPHYLPSRTYRTG 322
           +DP    PP        V    D K + +E+    PS    +P NDP+     S  Y   
Sbjct: 48  QDPSQEIPPSDNVFDYIVFRGSDVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWN 107

Query: 323 PSPHAPPHQTLQPAPHTAALPAQDKSGRRLY 415
            +  A P Q +QP P+ A       +G   Y
Sbjct: 108 QAQTAQPPQPVQPNPYGAPYQQAPPAGAPYY 138


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 KPRNDPSPHY-LPSRTYRTGPSPHAPPHQTLQPAP 367
           +P    SP Y  PS  Y   P+P +PP   + P P
Sbjct: 442 RPMQQFSPQYQYPSYPYPMFPAPFSPPRNAMMPIP 476


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 27/80 (33%), Positives = 31/80 (38%)
 Frame = +2

Query: 161 PHLPAPPPLVSEKNTVIVKHDAKQIHLEQNHQYPSKPRNDPSPHYLPSRTYRTGPSPHAP 340
           PH P   P V      +  H  +  H   NH Y S P + P P  L   TY     P  P
Sbjct: 176 PHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPY-SSPTSYPPP--LCPATY----CPSNP 228

Query: 341 PHQTLQPAPHTAALPAQDKS 400
           P    Q AP TA  P+   S
Sbjct: 229 P----QLAPATAIAPSSQSS 244


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/102 (24%), Positives = 34/102 (33%)
 Frame = +2

Query: 74  SSHPGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPPPLVSEKNTVIVKHDAKQIHLEQNH 253
           S+ P  P   P  +    PP     +   P +P PP L       +       + +    
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA-P 444

Query: 254 QYPSKPRNDPSPHYLPSRTYRTGPSPHAPPHQTLQPAPHTAA 379
             P  P + P    LP+      P P A P     PAP  AA
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 33/136 (24%), Positives = 45/136 (33%), Gaps = 2/136 (1%)
 Frame = +2

Query: 32  PHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPPPLVSEKNTVI 211
           P +  VS+ A   N   P  P   P+      PP            P PPP  +   ++ 
Sbjct: 294 PPSSRVSAAALAANKKRPP-PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352

Query: 212 VKHDAKQIHLEQNHQYPSKPRNDPSPHYLPS--RTYRTGPSPHAPPHQTLQPAPHTAALP 385
           +    +          P  PR+ PS    P    + R   +P APP     P     ALP
Sbjct: 353 LPPQGRSA------PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI--PGRSAPALP 404

Query: 386 AQDKSGRRLYQPQPKP 433
               + R    P P P
Sbjct: 405 PLGNASRTSTPPVPTP 420


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 28/112 (25%), Positives = 42/112 (37%)
 Frame = +2

Query: 92  PKGEPNFAPYNYPPYRAYEKIKDPHLPAPPPLVSEKNTVIVKHDAKQIHLEQNHQYPSKP 271
           P G   + P N P +       +P  P P PL +  + V      + ++   N Q     
Sbjct: 33  PSGTMAYHPGNAPLFTQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNVNTQVSHTA 92

Query: 272 RNDPSPHYLPSRTYRTGPSPHAPPHQTLQPAPHTAALPAQDKSGRRLYQPQP 427
             +P+  Y  +  Y   PS   PP Q  Q  P+   + A   S  R  + QP
Sbjct: 93  IPNPANGY--AAVYGGPPSQLPPPPQP-QSHPNVTVISA---SPARAIEQQP 138


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
 Frame = +2

Query: 29  SPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPPP----LVSE 196
           +PH   VS+ A + NS+ P L     +    N  P+    + +    P        L+S 
Sbjct: 131 TPHFPQVSNHAPN-NSNSPSLTWHTSSGDDSNQNPFFVRRQSQSSTSPVSDSVDENLLSA 189

Query: 197 KNTVIVKHDAKQIHLEQNHQYPSKPRNDPSPHYLPSRTYRTGPSPHAPPHQTLQPAPH 370
            ++V    +   +HL+QN+ Y S  R+  +P    +    T  S H     +     H
Sbjct: 190 VSSVTESVETN-LHLDQNYPYGSPVRSSKNPFLSSNSRLPTDDSSHTVGSHSFTSGTH 246


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
 Frame = +2

Query: 11  PQXDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPPPLV 190
           PQ  +  P A   +S +   +S  P   K   + AP N  P++       P  P   P +
Sbjct: 401 PQAGHPPPWAAASTSVSSSTSSPAPWA-KPASSAAPSNPAPWQ------QPAAPQSAPAL 453

Query: 191 SEKNTVIV--KHDAKQIHLEQNHQYPSKPRNDPSPHYLPSRTYRTGPSPHAPPHQTLQPA 364
           S   + +   +   +Q  ++ ++  PS+  N P   ++P  +    P+  APP   L P 
Sbjct: 454 SMNPSSLPPWQQPTQQSAVQPSNLVPSQ--NAP---FIPGTSAPLPPTTFAPPGVPLPPI 508

Query: 365 PHTAALPAQDKSGRRLYQP 421
           P    +P  + S   +  P
Sbjct: 509 PGAPGMPNLNMSQPPMVPP 527


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +2

Query: 245 QNHQYPSKPRNDPSPHYLPSRTYRTGPSPHAPPHQTLQPAPHTAALPAQDKSG 403
           Q   YPS P N    +Y PS       +P  P  Q   P    A  P QD+ G
Sbjct: 100 QPRLYPSAPLN----YYWPSYQSVPSAAPPPPSQQRYMPDSAVAYNPNQDQFG 148


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 268  LTRILMILLEMNLFCIVFYYNRVFL 194
            LT I  ILL     CI++YY+R FL
Sbjct: 1368 LTIIFSILLAAVAGCILYYYSRRFL 1392


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 4/146 (2%)
 Frame = +2

Query: 5   FHPQXDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPPP 184
           F PQ +  SP  R  S+  +D+  S   +P+ + N +  N      Y  +       P P
Sbjct: 379 FQPQPNTGSPFPRFTSTNTEDEQES--DIPQSDANDSTVNLNQPN-YANL------TPTP 429

Query: 185 LVSEKNTVIVKHDAKQIHLEQNHQYPSKPRNDPSPHYLPS-RTYRTGPSPHAPPHQT--- 352
            VS K     +          +   P+     P P   PS +   +      PPH T   
Sbjct: 430 QVSPKRPTYSRSSPL-----PSASVPALGDGSPDPPAAPSIQNSLSVHESEMPPHVTRDY 484

Query: 353 LQPAPHTAALPAQDKSGRRLYQPQPK 430
            QPA     +P +  S +    P+ K
Sbjct: 485 TQPAASATPVPKEKPSEKSEKPPKKK 510


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +2

Query: 152 IKDPHLPAPPPLVSEKNTVIVKHDAKQIHLEQNHQYPSKPRNDPSPHYLPS-RTYRTGPS 328
           +K      P P VS+     +K+DA +  +E      + P    +  Y P+    + G  
Sbjct: 442 LKSSDATIPKPSVSDLGVEKLKNDASKCAVESQSLMINDPSVSSTSFYNPNMEKLKNGAI 501

Query: 329 PHAPPHQTLQPA 364
             A  HQ L  A
Sbjct: 502 KQAIEHQALNAA 513


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
 Frame = +2

Query: 269 PRNDPSPHYLPSRT-YRTGPSPHAPPHQTLQ--PAPHTAALPAQDKSGRRLYQPQPKPQ 436
           P   P+P  +P       GP P  PP       P P     PA    G R Y P P+ +
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAE 800


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 119 YNYPPYRAYEKIKDPHLPAPPP---LVSEKNTVIVKHDAKQIHLEQNHQYPSKPRNDPSP 289
           Y+  P+  Y K    ++P  PP   +V+E    I+    ++ +L++  Q P     + S 
Sbjct: 621 YSRTPHETYSKASSKNVPLSPPKQRVVNEHALNIMSEKLQRTNLKE--QTPEMDIENSSQ 678

Query: 290 HYLPSRTYRTGPSPHAPPHQTLQPAP 367
           + LP    +  P   A P +T+  +P
Sbjct: 679 N-LPFSPMKISPI-RASPVKTIPSSP 702


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 319 GAFASCTSTPNLTTGSAYCCFTCTG*KW 402
           G  AS + T     G+ YC  T T  KW
Sbjct: 208 GIVASNSGTRETVNGNKYCMLTLTDLKW 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,520
Number of Sequences: 5004
Number of extensions: 51032
Number of successful extensions: 224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)