Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0014
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.43 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.76 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 14  QXDYCSPHARLVSSKAQDKNSSH-PGLPKGEPNFAPYNYPPYRAYEKIKDPHLPAPP 181
           Q    S H+ L  S A  +++ H PG+      F P +Y P++ +     PH  + P
Sbjct: 280 QPSLASHHSHL--SSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSP 334


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
 Frame = +2

Query: 218 HDAKQIHLEQNHQY-----PSKPRNDPSPHYLPSRTYRTGPSPHAPPHQTLQPAPHTAAL 382
           H    IH   +H +     P    + P  H       + G +PH  PH    P P    +
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETI 480


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 108 FGSPLGKPGCDEFLS*ALEDTRR 40
           F   L KPGCDE  S    D  R
Sbjct: 5   FSRDLSKPGCDEQTSRGDNDRSR 27


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 203 TVIVKHDAKQIHLEQNHQYPSKPRNDPSPHYLPSRTYR 316
           +V  + D + I + +N +YP +P  +   HY  +R  R
Sbjct: 106 SVFSRQDIETI-IRRNSRYPLRPPQEVISHYRRTRRDR 142


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 231 CFASCFTITVFFSETSGGGAG 169
           CFA  F I  FF+  SG   G
Sbjct: 9   CFARLFFIIGFFNAISGAIKG 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,248
Number of Sequences: 438
Number of extensions: 4093
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)