Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0011
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55) 36 0.046
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 32 0.43
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_41144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 30 2.3
SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3) 30 2.3
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_39777| Best HMM Match : DUF1168 (HMM E-Value=2.2) 29 4.0
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 4.0
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 29 4.0
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) 29 4.0
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 29 5.3
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 29 5.3
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 5.3
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_30287| Best HMM Match : CXC (HMM E-Value=4.6) 28 7.0
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12) 28 9.3
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10) 28 9.3
SB_55276| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 28 9.3
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33) 28 9.3
>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
Length = 284
Score = 35.5 bits (78), Expect = 0.046
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 101 PSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEEDT 241
PS IS + SI+ + SS + T+ PT P TTTKAP + T
Sbjct: 52 PSTISMHSSPSISVSVASSVMPSSTSVAPTTPPATTTKAPTTPPKPT 98
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +2
Query: 443 TTEKPSVTSIETSTTAKQESTTVVE--QLKESPMLNLRSAIPTEILNAPSLVPADTGEPL 616
TTE+P+ + T+T +E TT+ E E P + TE + + T EP
Sbjct: 18 TTEEPTTITETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITEITTTTEEPT 77
Query: 617 DDGIT-TDVPXNILNHRGNR 673
T + P I+ H R
Sbjct: 78 TTTTTAAETPTTIMRHNNRR 97
>SB_31358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 33.1 bits (72), Expect = 0.25
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Frame = +2
Query: 14 TESEIVKTDAPTITEVHQ---KESDKKPDDTQPSKISFSTQDSIN--------SDIYSSN 160
TES+ +T + TE + + S DDT+P + + S D+ N S I
Sbjct: 228 TESQSEQTQGESTTEPEETSSRRSSTATDDTKPERGTLSDADAANDQGGPSVASQIMQDG 287
Query: 161 ESTVTNGLPTAPSVTTTKAPIIEEED-------TSLFDHNPAFPPIPDDLAVLSNHGDEI 319
S G+ + +A +++++D T + DH + DLA L + GD+
Sbjct: 288 GSITVEGMAISEEDRDGRADVVDDKDEEESNASTVITDHME--EDVSTDLASL-DEGDDN 344
Query: 320 VPEPSAEG 343
V E AEG
Sbjct: 345 VEEVQAEG 352
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 32.3 bits (70), Expect = 0.43
Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 5/207 (2%)
Frame = +2
Query: 35 TDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTK 214
TDAP T +E+ P+ T S+ + + + + + + E+T AP T
Sbjct: 1005 TDAPATTAA--RETTAAPETTMASETTMAPEPTAAPETTVAPETTDAPATTLAPETTARP 1062
Query: 215 APIIEEEDTSLFDHNPAFPPIPDDLAVLSNHGDEIVPEPSAEGDHMTVHDTVXXXXXXXX 394
+ E T P I + E +A + +T
Sbjct: 1063 ETTVAPETTDA-------PAITMAAETTDAPAITMAAETTAAPETTVAPETTAAPETTAA 1115
Query: 395 XXXXXXXXXXXXDIILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEIL 574
KP+VT STT ++ T + + + P+ L++ PT IL
Sbjct: 1116 PETTMASETTMAPEATVVPKPTVTP---STTISPKTETSITEATKPPVDQLKTKQPTTIL 1172
Query: 575 NAPSLV-----PADTGEPLDDGITTDV 640
++V P T P++ IT ++
Sbjct: 1173 GETTIVPETTIPESTAAPVETTITPEI 1199
Score = 29.1 bits (62), Expect = 4.0
Identities = 33/154 (21%), Positives = 56/154 (36%)
Frame = +2
Query: 71 ESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEEDTSLF 250
E+ PD T ++ + S + ++ + + EST+ AP T + E T
Sbjct: 1981 ETIAAPDTTVAAETTASAETTVAPETTLAPESTLAPETTMAPETTMAPETTVAPETTVAA 2040
Query: 251 DHNPAFPPIPDDLAVLSNHGDEIVPEPSAEGDHMTVHDTVXXXXXXXXXXXXXXXXXXXX 430
+ A P ++ + PE +A D V DT
Sbjct: 2041 ESTDA-PDTTVAAETTASAETTVAPETTAAPDTTLVPDTTVAAETTAAAETTETTA---- 2095
Query: 431 DIILTTEKPSVTSIETSTTAKQESTTVVEQLKES 532
+ TT+ P+ T++ TTA E+T E + S
Sbjct: 2096 -VPATTDAPA-TNLPPETTAAPETTVSPETIAAS 2127
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 464 TSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGITTDVP 643
T++ TT + E++T ++ + A P E PS+ P T P D TT P
Sbjct: 252 TTVVPDTTVEPETSTTLKPTDVTEKPEASPATPAEYSTTPSVQPELTEAPQTDYPTTASP 311
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 31.5 bits (68), Expect = 0.76
Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 12/201 (5%)
Frame = +2
Query: 71 ESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEEDTSLF 250
E+ +PD T + + + + ++ ++ ++E+TVT G AP T + E T
Sbjct: 3480 ETTDEPDTTLALETTLAPETTMATETTVASETTVTPGSTAAPETTVAPGTTVALESTVAP 3539
Query: 251 DHNPAFPPIPDDLAVLSNHGDEIVPEPSAEGDHMTVHDT--VXXXXXXXXXXXXXXXXXX 424
+ + A P D+ + VPE + + +T +
Sbjct: 3540 ETSIA-PETTDEPETTVDPETTAVPETTVSQETTMAPETTALPESTVAPGTTVVPETTAV 3598
Query: 425 XXDIILTTEKP-SVTSIETS----TTAKQES-----TTVVEQLKESPMLNLRSAIPTEIL 574
++TT P S + ET+ TT ES TTV + E+P + S T +
Sbjct: 3599 PETTVVTTVAPDSTVAPETTFAPGTTVAPESTVAPGTTVPPETTETPETTVVS--ETTVT 3656
Query: 575 NAPSLVPADTGEPLDDGITTD 637
++ P T EP D +T D
Sbjct: 3657 PETTVAPETTAEP-DTTLTPD 3676
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 35 TDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTK 214
TDAP T E+ +PD TQ + + + + + + ++E+TVT AP T
Sbjct: 3142 TDAPETTVA--SETTAEPDTTQAPETTVTPETTKAPETTVASETTVTPETTVAPETTEEP 3199
Query: 215 APIIEEEDTSL 247
+ E T++
Sbjct: 3200 ETTVVPETTAV 3210
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 86 PDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEE 235
PD T S + + + ++ +I ++ESTV G AP T I E
Sbjct: 2159 PDSTVASVTTMAPESTLAPEITIASESTVAPGTTMAPESTVATGTTIAPE 2208
>SB_41144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 431 DIILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGE 610
D TT + S +T T K TT Q+ ++P+ +P +I +A LVP DT
Sbjct: 25 DFCFTTRTTGILSQDTQTPVKT-FTTPDTQILKTPL------VPLDI-SASRLVPLDTQT 76
Query: 611 PLDDGITTDVP 643
PL++ T P
Sbjct: 77 PLNNFYNTGYP 87
>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 113 SFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEEDTSLFDHNPAFPPIPDDLA 292
SFS QD + D+ + + L P V ++ P I+EE FDH P DL
Sbjct: 31 SFSLQDLVE-DMLEPTDVGLAEYLLNFPGVNCSQTPGIQEEKHDYFDH--IEDPFEFDLN 87
Query: 293 VLS---NHGDEIVPEP 331
S NH + I+ P
Sbjct: 88 ASSFHENHSENIMELP 103
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 29 VKTDAPTITEVHQKES--DKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSV 202
V+++ T+T V + S ++K +D + K + + DS + ++S VT+GLPT+ V
Sbjct: 1030 VRSENTTVTTVTVRSSVKEEKEEDVEAEKAASNCADSND---FNSPFGLVTSGLPTSGPV 1086
Query: 203 TT 208
T+
Sbjct: 1087 TS 1088
>SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3)
Length = 401
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +2
Query: 86 PDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEEDTSLFDHNP 262
PDD I SD Y ++ N LPT PS TT+ P + D S P
Sbjct: 109 PDDAGTDNIQAPRPTEKASDTYDYADTRALNKLPTNPS-NTTEPPSYQSLDQSTRGQRP 166
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Frame = +2
Query: 41 APTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNES--TVTNG-------LPTA 193
APT T ++ P T PS + T + S NE+ T T+G +PT
Sbjct: 924 APTATPPSGGGNETAPTATPPSGVGNETVPTATPPSGSGNETAPTATSGGEGGNVTVPTK 983
Query: 194 PSVTTTKAP 220
PS+ TT P
Sbjct: 984 PSINTTMTP 992
>SB_39777| Best HMM Match : DUF1168 (HMM E-Value=2.2)
Length = 333
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/89 (23%), Positives = 37/89 (41%)
Frame = +2
Query: 5 PLXTESEIVKTDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGL 184
P+ + K + PT EVH+K+ +K P+ KI S D S+ + + +G
Sbjct: 247 PIKQKKSTTKKETPTKKEVHKKQ-EKTPE----KKIVTSAADFFGSEPVHRSANKQLSGK 301
Query: 185 PTAPSVTTTKAPIIEEEDTSLFDHNPAFP 271
PS + + +D + P+ P
Sbjct: 302 RKQPSKEEGEDDVCATQDEPVKQEKPSQP 330
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 136 NRILSRKTYFRGLCIIWFLVTL 71
+R+L KTYF G+ +IW +L
Sbjct: 114 HRLLKNKTYFIGIALIWIFASL 135
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 136 NRILSRKTYFRGLCIIW 86
+R+L +KTYF G+ IIW
Sbjct: 773 HRLLRKKTYFIGIVIIW 789
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 29.1 bits (62), Expect = 4.0
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Frame = +2
Query: 68 KESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPT--APSVTTTKAPIIEEEDT 241
KE+D D Q + + D+ SD Y++N+ N AP TT E D
Sbjct: 550 KEADNYTPDNQTT--NNRATDNRASDDYTTNDEEANNYKTNNNAPDDDTTNH---EATDN 604
Query: 242 SLFDHNPAFPPIPDDLAVLSNHGDEIVPEPSAEGDHMTVHDT 367
DHN + PDD D H+T
Sbjct: 605 DAPDHNTTYYDTPDDYTTNDEEADNYKTNNDTTNHEAPHHNT 646
>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
Length = 1220
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 59 VHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTKAPIIEEED 238
+ + + +KP+D + + STQD+INS+ +S T L S T+ PI E+
Sbjct: 181 ISRGDDQEKPEDNSETISNHSTQDAINSEPEKGMQS--TGELSDQLSETSGGQPIQTEQP 238
Query: 239 TSLFDHN 259
+ + N
Sbjct: 239 LQVDETN 245
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 32 KTDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNE-----STVTNGLPTAP 196
KTDA T E+ K + +S ST + + S+ + ST T T P
Sbjct: 436 KTDATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTSTTKATTTP 495
Query: 197 SVTTTKA 217
S +TTKA
Sbjct: 496 STSTTKA 502
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 53 TEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPS 199
T V K SDK P+ T+PS S+ + + S+ T +N PT P+
Sbjct: 790 TPVSDKASDKNPEVTEPS--SYVNTEMASPAAAGSSSITPSNLRPTNPT 836
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 35 TDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPT--APSVTT 208
TD+ I + + E D P+D + + S TQDS + + S+ + +GL T A VT
Sbjct: 817 TDSKKIRQGNASEDDPTPEDDRRN--SSETQDSTSKNRRESD--SAISGLETSEASEVTH 872
Query: 209 TKAPIIEEEDTSLFDHN 259
+A ++E+T + + N
Sbjct: 873 PEANENDDEETGVENEN 889
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 28.7 bits (61), Expect = 5.3
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +2
Query: 2 YPLXTESEIVKTDAPTITEVHQK----ESDKKPDDTQPSKISFSTQDSINSDIYSSNEST 169
+P TE + APTITE E P T+PS T+ S+N I + +
Sbjct: 553 HPAITEPSV----APTITEQSVNPAITEQSVNPAITEPSVAPTITEPSVNPAITEQSVNP 608
Query: 170 VTNGLPTAPSVT-TTKAPIIEE 232
AP++T + PII E
Sbjct: 609 AITEPSVAPTITEPSGTPIITE 630
>SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 497 ESTTVVEQLKESPMLNL---RSAIPTEILNAPSLVPADTGEPLDDGITTDV 640
++T V + E+ L++ RSA+ ++LNA L P D PLD + T +
Sbjct: 183 KATIVQPMITEASTLSMCFCRSAMVVKLLNAQELPPKDDTGPLDVFVKTQL 233
>SB_30287| Best HMM Match : CXC (HMM E-Value=4.6)
Length = 250
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 107 KISFSTQDSINSDIYSSNESTVTNGLPT-----APSVTTTKAPIIEEEDTSLFDHN 259
KIS+S ++ I + N+ T+T T AP+ T K ++DT L D N
Sbjct: 68 KISYSCMNNTKQIIDNHNKRTITASSATEIASSAPTTTNNKTCNCRQKDTCLLDGN 123
>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
Length = 1879
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 440 LTTEKPSVTSIETSTTAKQESTTVVEQLKES 532
LT+++ S S+E T+K+ES VEQ + S
Sbjct: 1794 LTSKEESAPSVEQQQTSKEESDLCVEQQQTS 1824
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 27.9 bits (59), Expect = 9.3
Identities = 26/118 (22%), Positives = 48/118 (40%)
Frame = +2
Query: 14 TESEIVKTDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTA 193
T S+ KT T + SD D T + + + ++D S N++T N T+
Sbjct: 209 TTSDNNKTSNNNTTSDNDTTSDN--DTTFDNDTTTDNNKTTDNDTTSDNDTTTDNDT-TS 265
Query: 194 PSVTTTKAPIIEEEDTSLFDHNPAFPPIPDDLAVLSNHGDEIVPEPSAEGDHMTVHDT 367
+ TTT + DT+ + + D +N+ + +++ D T +DT
Sbjct: 266 DNDTTTNNDTNSDNDTTTSNDTTSDNDTTSDNDTTTNNDTTSDNDATSDNDTTTNNDT 323
>SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)
Length = 450
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 194 PSVTTTKAPIIEEEDTSLFDHNPAFPPIPDDLAVLSNHGDEIVPEP 331
PSVT P+ + T + N FPP+ L+ D IV P
Sbjct: 364 PSVTNHLQPVQDSHFTKSMEENYLFPPVHGSSQALNYVNDTIVLLP 409
>SB_55276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +2
Query: 29 VKTDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTT 208
V T AP+ + QK P D+ P D N + ++ N ++ + A S T
Sbjct: 105 VTTSAPSPSSAEQKSEGVSPSDSTPPASGNKAAD--NKENHTENGTSALDDQIDA-SQTN 161
Query: 209 TKAPIIEEEDTSLFDHNPAFPPIP 280
T P+ + D P PP+P
Sbjct: 162 TIPPLHRPHNRPSND-APKLPPLP 184
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 32 KTDAPTITEVHQKESDK-KPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTT 208
KT + T + K S K P + + + S + S+N+ +S +++ L T+P +
Sbjct: 131 KTSSKTSPKTSPKSSPKTSPKTSSKTSLKTSQKTSLNASRKTSRRTSLKRSLKTSPKTSR 190
Query: 209 TKAP 220
+P
Sbjct: 191 KTSP 194
>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
Length = 1065
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 23 EIVKTDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNG 181
E+ + PTIT + S + +T PS +SFS +S D++ VT G
Sbjct: 734 ELRHSTGPTITITPEMTSKEGHKNTDPSLVSFS-MESDRMDVWEIPRDCVTLG 785
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,736
Number of Sequences: 59808
Number of extensions: 362034
Number of successful extensions: 1199
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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