Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0011
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    31   0.015
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 38   DAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPSVTTTK 214
            D  T +E ++ E   + +   PS +S STQ S N+D      + VT       ++T TK
Sbjct: 964  DCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANND--KDTNAVVTQSKEARDNITATK 1020


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 607 PGVCWYKRWSVE 572
           P   WYK W VE
Sbjct: 206 PKTPWYKGWKVE 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,600
Number of Sequences: 438
Number of extensions: 3342
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)