Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0010
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    34   0.14 
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AL117202-2|CAB55092.1|  302|Caenorhabditis elegans Hypothetical ...    28   9.4  

>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = +1

Query: 214 DDICIILLYSLLYALTRRTELQQCLPTFAARGAVPCAYKYELTFTLSKTLRNSH*AYCSL 393
           D +  I  Y  L A+  R E++Q L T   +  +P +     T +   ++R+S    C  
Sbjct: 433 DFVFTITFYGALMAVVGRYEIEQELKT---QKPLPESESPSETSSTG-SMRSSELDDCKF 488

Query: 394 IDMLAG*CKFSTNNYVCS 447
             M+A  CKF TN +VCS
Sbjct: 489 RRMIANVCKFLTNTWVCS 506


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 195 IISKLQTNFTGECFKGLIVLILIIFATFIFYQLHYLLFK 79
           + S  +T+F   CF    V   I+ ++F+FY  H L  K
Sbjct: 42  LTSTERTSFNLICFSRAFVNFYILLSSFLFYSYHPLFCK 80


>AL117202-2|CAB55092.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.2 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 487 YIYLININALTSKSILLTFLLEIDINNLDTVHLGNCKKL 603
           ++  +++  L+SK ++L  + + +   L+++HLGNC  L
Sbjct: 141 HVSSLSLRGLSSKEMML-IISKCESGVLESIHLGNCNML 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,089
Number of Sequences: 27780
Number of extensions: 262083
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)