Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0009
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0905 + 25843547-25844314 31 0.74
05_01_0488 - 4070506-4072277,4072455-4072557 31 0.74
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186... 30 2.3
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 3.0
02_01_0302 - 2021221-2023305 29 3.0
04_04_0512 + 25806599-25808080 29 3.9
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.9
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 29 3.9
11_06_0289 - 21969248-21973516 29 5.2
08_01_0397 - 3509186-3510291,3510322-3512335 28 9.1
02_03_0167 - 15923872-15925683 28 9.1
02_03_0131 - 15576422-15577021 28 9.1
>06_03_0905 + 25843547-25844314
Length = 255
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 426 PVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVH-TASLYHATP 572
PV + P V + PVV P+ + P V + P+V PV + T + + TP
Sbjct: 100 PVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVTYPTP 149
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
+ P + + PVV PV + P + + PVV P+ + P V
Sbjct: 103 YPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPV 144
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 618 LVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQ 439
L + R +L EE + C SEL E E ++ S++ S + L+E++ +
Sbjct: 185 LEDELHEVRGKLDASEE-KNMRCHCNFGANSELSEHEEKQQVSDVETSSLQKDLDEVKSE 243
Query: 438 SEALE 424
EALE
Sbjct: 244 KEALE 248
>07_01_0250 -
1864990-1865005,1865429-1865502,1865588-1865659,
1865854-1865920,1866365-1866429,1866812-1866843,
1867250-1867326,1867445-1867646,1867733-1867859
Length = 243
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
VLH A V T VV + ++HS V+ +V SG VV
Sbjct: 60 VLHRAASVDPTAVVEAGAVVHSGAVLGKDVVVGSGAVV 97
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 103 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 201
TP M+ + P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 420 SAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAP 518
+ P HS P H+TP S P +AP HS P
Sbjct: 502 TTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPP 534
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 84 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 224
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 165 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 73
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +3
Query: 423 APVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGP 536
AP+ P+V TP+V P+ +AP P
Sbjct: 1141 APMAQDTPMVQGTPMVQGTPMAEGTTGAQAAPTAQGAP 1178
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -2
Query: 612 QRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQSE 433
++ ++ E+ V+EE + G+R E ER + E + R +G E + Q +
Sbjct: 419 EKTKKLNEQTGVEEETAVRQGGGGEREEDEKDERGDGEEEGKEERRDMEKGGEERKEQQQ 478
Query: 432 ALEQSESQGQ 403
E+ E +G+
Sbjct: 479 --EEQEKEGR 486
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 219 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 61
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
>02_03_0167 - 15923872-15925683
Length = 603
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 176 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 54
AG+ +L+ + +++RGS + +FDG N+SVV W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 195 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 67
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,778
Number of Sequences: 37544
Number of extensions: 327146
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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