Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0009
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ564970-1|CAD92441.1| 106|Homo sapiens protocadherin protein. 46 2e-04
AJ564969-1|CAD92440.1| 222|Homo sapiens protocadherin protein. 46 2e-04
AF332217-1|AAK13469.1| 1340|Homo sapiens protocadherin 11 protein. 46 2e-04
AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isofo... 43 0.001
AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isofo... 43 0.001
AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isofo... 43 0.001
AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-link... 43 0.001
AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-link... 43 0.001
AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-link... 43 0.001
AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-link... 43 0.001
AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-link... 43 0.001
AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-link... 43 0.001
AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-link... 43 0.001
AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-link... 43 0.001
AJ564946-1|CAD92425.1| 177|Homo sapiens protocadherin protein. 43 0.001
AJ564945-1|CAD92424.1| 224|Homo sapiens protocadherin protein. 43 0.001
AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein. 43 0.001
AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein. 43 0.001
AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein. 43 0.001
AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein. 43 0.001
AB037747-1|BAA92564.1| 424|Homo sapiens KIAA1326 protein protein. 43 0.001
AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 34 0.63
X90569-1|CAA62189.1| 7962|Homo sapiens elastic titin protein. 33 0.83
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 33 0.83
AK094959-1|BAC04461.1| 148|Homo sapiens protein ( Homo sapiens ... 32 1.9
AF417580-1|AAL86401.2| 906|Homo sapiens transmembrane channel-l... 32 1.9
AF020267-1|AAC26597.1| 223|Homo sapiens myosin-IXb splice varia... 32 1.9
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein. 32 2.5
BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4 ... 32 2.5
BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4 ... 32 2.5
AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcript... 32 2.5
AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein pr... 32 2.5
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein. 32 2.5
AL049712-6|CAI22420.2| 906|Homo sapiens transmembrane channel-l... 32 2.5
AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens ... 32 2.5
BC014233-1|AAH14233.2| 235|Homo sapiens MGC20647 protein protein. 31 4.4
BC008289-1|AAH08289.1| 240|Homo sapiens MGC20647 protein protein. 31 4.4
BC033649-1|AAH33649.1| 274|Homo sapiens PRR7 protein protein. 31 5.8
BC032473-1|AAH32473.1| 778|Homo sapiens melanoma antigen family... 31 5.8
BC024233-1|AAH24233.2| 274|Homo sapiens proline rich 7 (synapti... 31 5.8
BC014070-1|AAH14070.1| 834|Homo sapiens melanoma antigen family... 31 5.8
AL929410-2|CAH71561.1| 834|Homo sapiens melanoma antigen family... 31 5.8
AL929410-1|CAH71560.1| 778|Homo sapiens melanoma antigen family... 31 5.8
AL133628-1|CAB63752.1| 476|Homo sapiens hypothetical protein pr... 31 5.8
AK074092-1|BAB84918.1| 521|Homo sapiens FLJ00163 protein protein. 31 5.8
AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor NY... 31 5.8
AF300328-1|AAQ14483.1| 778|Homo sapiens MAGE tumor antigen CCF ... 31 5.8
AF258554-1|AAG23757.1| 778|Homo sapiens PP2250 protein. 31 5.8
AF217963-1|AAG09704.1| 778|Homo sapiens NRAGE protein. 31 5.8
AF124440-1|AAD31421.1| 574|Homo sapiens MAGE tumor antigen D1 p... 31 5.8
AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4 is... 31 5.8
AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4 is... 31 5.8
AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4, i... 31 5.8
AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4, i... 31 5.8
>AJ564970-1|CAD92441.1| 106|Homo sapiens protocadherin protein.
Length = 106
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS PV + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 15 HSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPP 66
>AJ564969-1|CAD92440.1| 222|Homo sapiens protocadherin protein.
Length = 222
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS PV + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 60 HSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPP 111
>AF332217-1|AAK13469.1| 1340|Homo sapiens protocadherin 11 protein.
Length = 1340
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS PV + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1178 HSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPP 1229
>AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isoform 6
protein.
Length = 1329
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1167 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1218
>AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isoform 7
protein.
Length = 1310
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199
>AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isoform 8
protein.
Length = 1339
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1177 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1228
>AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226
>AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236
>AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226
>AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199
>AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236
>AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226
>AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199
>AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236
>AJ564946-1|CAD92425.1| 177|Homo sapiens protocadherin protein.
Length = 177
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 15 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 66
>AJ564945-1|CAD92424.1| 224|Homo sapiens protocadherin protein.
Length = 224
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 62 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 113
>AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein.
Length = 1337
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226
>AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein.
Length = 1347
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236
>AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.
Length = 1310
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199
>AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.
Length = 1347
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236
>AB037747-1|BAA92564.1| 424|Homo sapiens KIAA1326 protein protein.
Length = 424
Score = 43.2 bits (97), Expect = 0.001
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS V + + HS PV + L HS P + + L HS P+V +L+H+ P
Sbjct: 262 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 313
>AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ39621 fis, clone SMINT2001158. ).
Length = 226
Score = 33.9 bits (74), Expect = 0.63
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYH 563
H+ P+ H P+ H+ H+ L HS +H+ H+ P+ HT++ H
Sbjct: 154 HTYPITH--PLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTHTSTHTH 200
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
H++ H H+ P+ H PL H+ H+ L HS +HT H P
Sbjct: 142 HTSTHTHPLTFTHTYPITH--PLTHTPTHTHTHALTHSHTHIHTHMHSHTHP 191
Score = 31.5 bits (68), Expect = 3.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHA 566
HS H H++ H H+ P+ H PL H+ HT +L H+
Sbjct: 130 HSHTHAHKHTYTHTSTHTHPLTFTHTYPITH--PLTHTPTHTHTHALTHS 177
>X90569-1|CAA62189.1| 7962|Homo sapiens elastic titin protein.
Length = 7962
Score = 33.5 bits (73), Expect = 0.83
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -2
Query: 657 EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
EK +E+ + QRV R E+S +EEW +E + G S R E RE E E
Sbjct: 6130 EKRFVAEEKLSFAVPQRVEVTRHEVSAEEEWSYSEE---EEGVSISVYREEEREEEEEAE 6186
Query: 477 RSEPQGLNE 451
+E + + E
Sbjct: 6187 VTEYEVMEE 6195
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 33.5 bits (73), Expect = 0.83
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -2
Query: 657 EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
EK +E+ + QRV R E+S +EEW +E + G S R E RE E E
Sbjct: 10392 EKRFVAEEKLSFAVPQRVEVTRHEVSAEEEWSYSEE---EEGVSISVYREEEREEEEEAE 10448
Query: 477 RSEPQGLNE 451
+E + + E
Sbjct: 10449 VTEYEVMEE 10457
>AK094959-1|BAC04461.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ37640 fis, clone BRHIP1000174. ).
Length = 148
Score = 32.3 bits (70), Expect = 1.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 414 IHSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
+ S+PV+H H P+ + L+ S+PV+H H P+ T +L ++P
Sbjct: 71 VSSSPVIHEVQCCHH-PLGSTMTLVSSSPVIHEVQCCHH-PLGSTITLVSSSP 121
>AF417580-1|AAL86401.2| 906|Homo sapiens transmembrane channel-like
protein 2 protein.
Length = 906
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 603 RRAREELSVQEEWRGTETLCGQRGRSE---LGERSEPRERSELGERSEPQGLNELQGQSE 433
RR REEL QE T G+R R E ER+ +R + R E + + + +S
Sbjct: 77 RRHREELGEQERGEAERTCEGRRKRDERASFQERTAAPKREKEIPRKEEKSKRQKKPRSS 136
Query: 432 ALEQSESQGQ 403
+L S S G+
Sbjct: 137 SLASSASGGE 146
>AF020267-1|AAC26597.1| 223|Homo sapiens myosin-IXb splice variant
protein.
Length = 223
Score = 32.3 bits (70), Expect = 1.9
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 61 LQSCTTLRFQLPSNTPIMS--KIMLPRSMSSHIPSRIP 168
L S T+R + P TPIMS I LP + SH+P P
Sbjct: 110 LSSFVTVRVKTPRRTPIMSTANIKLPPGLPSHLPRWAP 147
>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
Length = 1898
Score = 31.9 bits (69), Expect = 2.5
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 612 QRVRRAREELSVQEE----WRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQ 445
Q+ RR R++ QEE WR ET+ R E + EP+ + EL E E + L +L+
Sbjct: 227 QQQRRERQDRVFQEEEEKEWRKRETVL--RKEEEKLQEEEPQRQRELQE--EEEQLRKLE 282
Query: 444 GQSEALEQSESQGQ 403
Q E+ E + Q
Sbjct: 283 RQELRRERQEEEQQ 296
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -2
Query: 657 EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
E+F ++ R L++ R+ REE Q R + + + R+ E +
Sbjct: 202 EEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQ 261
Query: 477 RSEPQGLNELQGQSEALEQSESQ 409
EPQ ELQ + E L + E Q
Sbjct: 262 EEEPQRQRELQEEEEQLRKLERQ 284
>BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4
(influences HLA class II expression) protein.
Length = 641
Score = 31.9 bits (69), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA +++P VHS +++ +Y
Sbjct: 565 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 608
>BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4
(influences HLA class II expression) protein.
Length = 641
Score = 31.9 bits (69), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA +++P VHS +++ +Y
Sbjct: 565 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 608
>AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcription
factor RFX4 variant 3 protein.
Length = 735
Score = 31.9 bits (69), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA +++P VHS +++ +Y
Sbjct: 659 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 702
>AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein
protein.
Length = 480
Score = 31.9 bits (69), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA +++P VHS +++ +Y
Sbjct: 404 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 447
>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
Length = 1943
Score = 31.9 bits (69), Expect = 2.5
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 612 QRVRRAREELSVQEE----WRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQ 445
Q+ RR R++ QEE WR ET+ R E + EP+ + EL E E + L +L+
Sbjct: 227 QQQRRERQDRVFQEEEEKEWRKRETVL--RKEEEKLQEEEPQRQRELQE--EEEQLRKLE 282
Query: 444 GQSEALEQSESQGQ 403
Q E+ E + Q
Sbjct: 283 RQELRRERQEEEQQ 296
Score = 31.1 bits (67), Expect = 4.4
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = -2
Query: 657 EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
E+F ++ R L++ R+ REE Q R + + + R+ E +
Sbjct: 202 EEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQ 261
Query: 477 RSEPQGLNELQGQSEALEQSESQ 409
EPQ ELQ + E L + E Q
Sbjct: 262 EEEPQRQRELQEEEEQLRKLERQ 284
>AL049712-6|CAI22420.2| 906|Homo sapiens transmembrane channel-like
2 protein.
Length = 906
Score = 31.9 bits (69), Expect = 2.5
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 603 RRAREELSVQEEWRGTETLCGQRGRSE---LGERSEPRERSELGERSEPQGLNELQGQSE 433
RR REEL QE T G+R R E ER+ +R + R E + + + +S
Sbjct: 77 RRHREELGEQERGEAERTCEGRRKRDERASFQERTAAPKREKEIPRREEKSKRQKKPRSS 136
Query: 432 ALEQSESQGQ 403
+L S S G+
Sbjct: 137 SLASSASGGE 146
>AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens
cDNA FLJ90432 fis, clone NT2RP3000677, weakly similar to
DNA BINDING PROTEIN RFX2. ).
Length = 592
Score = 31.9 bits (69), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA +++P VHS +++ +Y
Sbjct: 516 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 559
>BC014233-1|AAH14233.2| 235|Homo sapiens MGC20647 protein protein.
Length = 235
Score = 31.1 bits (67), Expect = 4.4
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = -2
Query: 615 VQRVRRAREELSVQEE--WRGT----ETLCGQRGRSELGERSEPRERSELGERSEPQGLN 454
+Q RR R L + W+G E +RGR LGE +E R SE ER G
Sbjct: 10 LQAARRPRPSLGAARDRGWKGESGKKERKEKERGRVNLGESAEGRAASECPERG--GGGG 67
Query: 453 ELQGQSEALEQSES 412
E +G+ E E+ +
Sbjct: 68 EGEGEEEEEEEGSA 81
>BC008289-1|AAH08289.1| 240|Homo sapiens MGC20647 protein protein.
Length = 240
Score = 31.1 bits (67), Expect = 4.4
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = -2
Query: 615 VQRVRRAREELSVQEE--WRGT----ETLCGQRGRSELGERSEPRERSELGERSEPQGLN 454
+Q RR R L + W+G E +RGR LGE +E R SE ER G
Sbjct: 15 LQAARRPRPSLGAARDRGWKGESGKKERKEKERGRVNLGESAEGRAASECPERG--GGGG 72
Query: 453 ELQGQSEALEQSES 412
E +G+ E E+ +
Sbjct: 73 EGEGEEEEEEEGSA 86
>BC033649-1|AAH33649.1| 274|Homo sapiens PRR7 protein protein.
Length = 274
Score = 30.7 bits (66), Expect = 5.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 453 HSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS P VH PL+H P + P H+ P H +L H P
Sbjct: 91 HSHPHVHVHPLLHHGP---AQPHAHAHPHPHHHALPHPPP 127
>BC032473-1|AAH32473.1| 778|Homo sapiens melanoma antigen family D,
1 protein.
Length = 778
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367
>BC024233-1|AAH24233.2| 274|Homo sapiens proline rich 7 (synaptic)
protein.
Length = 274
Score = 30.7 bits (66), Expect = 5.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 453 HSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
HS P VH PL+H P + P H+ P H +L H P
Sbjct: 91 HSHPHVHVHPLLHHGP---AQPHAHAHPHPHHHALPHPPP 127
>BC014070-1|AAH14070.1| 834|Homo sapiens melanoma antigen family D,
1 protein.
Length = 834
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 391 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 423
>AL929410-2|CAH71561.1| 834|Homo sapiens melanoma antigen family D,
1 protein.
Length = 834
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 391 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 423
>AL929410-1|CAH71560.1| 778|Homo sapiens melanoma antigen family D,
1 protein.
Length = 778
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367
>AL133628-1|CAB63752.1| 476|Homo sapiens hypothetical protein
protein.
Length = 476
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 33 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 65
>AK074092-1|BAB84918.1| 521|Homo sapiens FLJ00163 protein protein.
Length = 521
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 349 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 381
>AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor
NYD-sp10 protein.
Length = 641
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA ++ P VHS +++ +Y
Sbjct: 565 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 608
>AF300328-1|AAQ14483.1| 778|Homo sapiens MAGE tumor antigen CCF
protein.
Length = 778
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367
>AF258554-1|AAG23757.1| 778|Homo sapiens PP2250 protein.
Length = 778
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367
>AF217963-1|AAG09704.1| 778|Homo sapiens NRAGE protein.
Length = 778
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367
>AF124440-1|AAD31421.1| 574|Homo sapiens MAGE tumor antigen D1
protein.
Length = 574
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
PV PV+ P+I PV+ P+V GPVV
Sbjct: 131 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 163
>AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4
isoform F protein.
Length = 370
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA ++ P VHS +++ +Y
Sbjct: 294 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 337
>AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4
isoform E protein.
Length = 390
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA ++ P VHS +++ +Y
Sbjct: 314 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 357
>AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4,
isoform d protein.
Length = 735
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA ++ P VHS +++ +Y
Sbjct: 659 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 702
>AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4,
isoform c protein.
Length = 744
Score = 30.7 bits (66), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
++ S P +H TPV P + SA ++ P VHS +++ +Y
Sbjct: 668 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 711
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,883,016
Number of Sequences: 237096
Number of extensions: 1775182
Number of successful extensions: 10785
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 9875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10687
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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