Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0009
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 111 HVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHN 290
           H+ D  P   E  Y      T  H+   ETR     KG   + +P GS+R    + D+ N
Sbjct: 166 HIRDVGP---EDGYKTYQCRT-KHRLTGETRLS-ATKGRLVITEPVGSVRPKFPSMDNIN 220

Query: 291 GFN 299
           G +
Sbjct: 221 GLS 223


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 450 VHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           V+STP  H   + H    +H+ P  H      T    H+TP
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAA-TPHHQHSTP 447


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 108 DHVEDHAPAKYEFSYSVEDP 167
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 108 DHVEDHAPAKYEFSYSVEDP 167
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 577 YTQLLSCTPYTLHQHT 624
           +  ++SC+P T+H  T
Sbjct: 358 FCNIVSCSPQTVHPET 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,462
Number of Sequences: 438
Number of extensions: 3346
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)