Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    28   0.58 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   7.1  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    24   7.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   9.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   9.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   9.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   9.4  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 221 RCRHSSSKHHVVGMRTNPVSCLTHYTFFSHV 129
           +CR S  K+ +   R  P S L+HY   SH+
Sbjct: 660 KCRWSDCKYEI--QRLTPASELSHYQLLSHI 688


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 231 YPRQVSPLIQQTSRSRDEDEPGLLSYSLYI 142
           +P +V+P+I   S   + D PG   +S+++
Sbjct: 176 HPPEVAPMIAIPSSRSNYDSPGWAHHSIFL 205


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 166 SPVLLTIHFSAMFLWFYLCINRSL 95
           +PV L   F AMFLW  L +N ++
Sbjct: 323 APVFLITLF-AMFLWIVLALNNTI 345


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 66   VSIVCSVGLRIGYYLYF 16
            V ++C + + IGY+L+F
Sbjct: 2373 VCLICQLSVIIGYFLFF 2389


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 381  FFFFLFYAQIRNKVARWQSNIIIVVR 304
            FFF ++   +RN VA W+ + ++  R
Sbjct: 1069 FFFQIYKISMRNFVAYWRDSSLLRAR 1094


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 175 RTRSPVLLTIHFSAMFLWFYLCINRSLPAMFFWFYLCI 62
           R R    L I F+ +FL   +C  R      F +YLCI
Sbjct: 558 RNRRNAKLLIAFTILFLVGLICGWRLNRFTMFIYYLCI 595


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 90  PCFFGFICVSIVCSVGLRIGYYLYFIP 10
           PC F  IC ++  ++G     Y YF P
Sbjct: 360 PCVFSIICTAVSANMG---PMYPYFYP 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,669
Number of Sequences: 5004
Number of extensions: 25635
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)