Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)              29   1.3  
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)             28   3.0  
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.0  
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)               27   4.0  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        27   4.0  
SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022)                  27   4.0  
SB_7990| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_2558| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_36784| Best HMM Match : Rho_N (HMM E-Value=0.0017)                  26   9.2  
SB_30293| Best HMM Match : Rho_N (HMM E-Value=0.0017)                  26   9.2  
SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)                   26   9.2  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         26   9.2  
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)             26   9.2  
SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)                  26   9.2  

>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
          Length = 1097

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = -2

Query: 144 IFQPCFFGFICVSIVACQPCFFGFICVSIVC 52
           +++PC    + +  ++C+PC   F+  ++ C
Sbjct: 27  LYRPCHADLVIIQTLSCRPCHTDFVMQTLSC 57


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 230 IPARCRHSSSKHHVVGMRTNPVSCLTHYTFFSH 132
           +P  CR+ +S HHV  + +  V CL  Y    H
Sbjct: 585 VPCLCRYVASVHHVYVVMSPVVPCLCPYVASVH 617


>SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)
          Length = 816

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 135 PCFFGFICVS-IVACQPCFFGFICVSIVCSVGLRIGYY 25
           PC  G+  ++    C+PC +G+ C +   SV L  G+Y
Sbjct: 113 PCLTGYFRLNRFGVCKPCSYGYYCSNE--SVNLMPGFY 148


>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 150 VSKTGDRVRPHPYYVMFAG*VATPGGDN 233
           +SK G+ +  H Y ++FA  +A  GGD+
Sbjct: 149 LSKEGENITVHQYCLLFASGLAQNGGDD 176


>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
          Length = 460

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 93  GKLRLIHK*NQRNMAEKCIVSKTGDRVRPHPY 188
           G+ R  H+   R    KC+ ++  DR + HP+
Sbjct: 14  GRHRCAHRPETRGPTHKCLFTEYQDRYKDHPF 45


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 175  RTRSPVLLTIHFSAMFLWFYL 113
            R RSPV+ T H SA+ + FYL
Sbjct: 1251 RFRSPVIYTQHNSALIMTFYL 1271


>SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022)
          Length = 178

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  PILRPTEHTIDTQIKPKKHGWQATIDT 112
           PIL+PT+ T ++ ++P KH     +D+
Sbjct: 83  PILKPTQPTRNSYVRPLKHFANRAVDS 109


>SB_7990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 106 NRSLPAMFFWFYLCINSMFSRSEN 35
           NR+ P  F+W Y   N+  SR EN
Sbjct: 100 NRTAPTFFYWGYGEPNNYMSRGEN 123


>SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 135 PCFFGFICVS-IVACQPCFFGFICVSIVCSVGLRIGYY 25
           PC  G+  +     C+PC +G+ C +   SV L  G+Y
Sbjct: 204 PCLPGYFRLDRFGVCKPCSYGYYCSNE--SVNLMPGFY 239


>SB_2558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 206 SSKHHVVGMRTNPVSCLTHYTFFSH 132
           SSKH++ G +      LTHY +  H
Sbjct: 160 SSKHNLTGAKYGSFHALTHYEYQKH 184


>SB_36784| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 456

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  PILRPTEHTIDTQIKPKKHGWQATIDT 112
           PIL+P++ T ++ ++P KH     +D+
Sbjct: 83  PILKPSQPTRNSHVRPLKHFANRAVDS 109


>SB_30293| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 1078

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  PILRPTEHTIDTQIKPKKHGWQATIDT 112
           PIL+P++ T ++ ++P KH     +D+
Sbjct: 83  PILKPSQPTQNSHVRPLKHFANRAVDS 109


>SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 493

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  PILRPTEHTIDTQIKPKKHGWQATIDT 112
           PIL+P++ T ++ ++P KH     +D+
Sbjct: 83  PILKPSQPTRNSHVRPLKHFANRAVDS 109


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 96  CQPCFFGFICVSIVCSVGLRIGYYL 22
           CQP  + ++C  +    GL +G YL
Sbjct: 512 CQPQLYSYLCRQVPALFGLVVGEYL 536


>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
          Length = 367

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 135 PCFFGFICVSIVA-CQPCFFGFICVSIVCSVGLRIGYY 25
           PC  G+  +     C+PC +G+ C +   SV L  G+Y
Sbjct: 61  PCLPGYFRLDRFGMCKPCSYGYYCSNE--SVNLMPGFY 96


>SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 1064

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 32  PILRPTEHTIDTQIKPKKHGWQATIDT 112
           PIL+P++ T ++ ++P KH     +D+
Sbjct: 83  PILKPSQPTRNSHVRPLKHFANRAVDS 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,276
Number of Sequences: 59808
Number of extensions: 189494
Number of successful extensions: 424
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)