Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0006
(385 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398890-1|ABD61606.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1 prot... 28 3.6
AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA... 28 3.6
BT021212-1|AAX33360.1| 758|Drosophila melanogaster SD03462p pro... 27 6.3
AJ289232-1|CAC81969.1| 758|Drosophila melanogaster matrix metal... 27 6.3
AE013599-907|AAF58911.5| 1136|Drosophila melanogaster CG1794-PA,... 27 6.3
AE013599-906|AAS64885.1| 758|Drosophila melanogaster CG1794-PB,... 27 6.3
>DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398890-1|ABD61606.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1 protein.
Length = 2043
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 872 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930
>AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA
protein.
Length = 2249
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 222 QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
++ P +Q + DE PG Y ++ F VA PC+ FI +++ C +
Sbjct: 929 ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 987
>BT021212-1|AAX33360.1| 758|Drosophila melanogaster SD03462p
protein.
Length = 758
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
H HH + P SC+T+Y S + LF+++
Sbjct: 499 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 534
>AJ289232-1|CAC81969.1| 758|Drosophila melanogaster matrix
metalloproteinase 2-MMP protein.
Length = 758
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
H HH + P SC+T+Y S + LF+++
Sbjct: 499 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 534
>AE013599-907|AAF58911.5| 1136|Drosophila melanogaster CG1794-PA,
isoform A protein.
Length = 1136
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
H HH + P SC+T+Y S + LF+++
Sbjct: 877 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 912
>AE013599-906|AAS64885.1| 758|Drosophila melanogaster CG1794-PB,
isoform B protein.
Length = 758
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
H HH + P SC+T+Y S + LF+++
Sbjct: 499 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 534
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,475
Number of Sequences: 53049
Number of extensions: 263991
Number of successful extensions: 501
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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