Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.        28   2.6  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    28   2.6  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   6.0  
L15313-4|AAA28200.1|  164|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U20864-5|AAN65321.1|  295|Caenorhabditis elegans Aquaporin or aq...    26   7.9  
U20864-4|AAC46664.2|  304|Caenorhabditis elegans Aquaporin or aq...    26   7.9  
AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm rec...    26   7.9  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    22   9.1  

>Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical
           protein R12H7.1 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -1

Query: 142 FSAMFLWFYLCINRSLPAMFFWFYLCI 62
           F  ++ W++L    +L ++F+W Y+ +
Sbjct: 283 FLFLWFWYFLLAGATLCSLFYWIYISV 309


>U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -1

Query: 142 FSAMFLWFYLCINRSLPAMFFWFYLCI 62
           F  ++ W++L    +L ++F+W Y+ +
Sbjct: 283 FLFLWFWYFLLAGATLCSLFYWIYISV 309


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 100 SLPAMFFWFYLCINSMFSRSENRLLSIFH 14
           S+P +F  F+ C N+       RL+S FH
Sbjct: 31  SIPVLFHMFHRCKNTQLFHFNIRLISAFH 59


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 124 WFYLCINRSLPAMFFWFYLCINSMFSRSENRLLSIFHTPK 5
           W     NRS   +  W+ L  NS+  R  N L+     PK
Sbjct: 532 WQLKKANRSKQFLMRWYELFANSLEGRGSNLLVDFSRVPK 571


>L15313-4|AAA28200.1|  164|Caenorhabditis elegans Hypothetical
           protein ZK353.3 protein.
          Length = 164

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 32  PILRPTEHTIDTQI---KPKKHGWQATIDTQI 118
           P+ RPT +T+D+Q+    PKK   Q+  D  I
Sbjct: 62  PVARPTRNTVDSQMMLGPPKKANDQSASDCSI 93


>U20864-5|AAN65321.1|  295|Caenorhabditis elegans Aquaporin or
           aquaglyceroporin relatedprotein 1, isoform b protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 90  PCFFGFICVSIVCSVGLRIGY 28
           P FFGF+ + I    G+ IGY
Sbjct: 192 PMFFGFLVMMIGTGFGMNIGY 212


>U20864-4|AAC46664.2|  304|Caenorhabditis elegans Aquaporin or
           aquaglyceroporin relatedprotein 1, isoform a protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 90  PCFFGFICVSIVCSVGLRIGY 28
           P FFGF+ + I    G+ IGY
Sbjct: 201 PMFFGFLVMMIGTGFGMNIGY 221


>AF016433-10|AAB65387.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 130 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 207 IQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCF 82
           IQ + R+R  ++   L+  L    PCF  +I V ++   P F
Sbjct: 233 IQMSKRTRALNKQLFLTLGLQTLLPCFTQYIPVGLIFILPLF 274


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 22.2 bits (45), Expect(2) = 9.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 168 GLLSYSLYIFQPCFFGFICVSIVACQPC 85
           GLL+YSL I    F+  + + +++   C
Sbjct: 150 GLLAYSLAIVATSFYHTVFLLVLSATSC 177



 Score = 22.2 bits (45), Expect(2) = 9.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 99  ACQPCFFGFICVSIVCSVGLRIGYYLYFI 13
           ACQ  + G  C++    +   I +Y +FI
Sbjct: 193 ACQQSYNGKYCLAERYQISDNIHFYFFFI 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,113,559
Number of Sequences: 27780
Number of extensions: 145771
Number of successful extensions: 403
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)