Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.40 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.53 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   8.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 75  FICVSIVCSVGLRIGYYLY--FIP 10
           F C+ IV ++  R+GY+L+  +IP
Sbjct: 200 FTCIQIVFNLRRRLGYHLFHTYIP 223


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 75  FICVSIVCSVGLRIGYYLY--FIP 10
           F C+ +V  +  R+GYYL+  +IP
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIP 254


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 56  TIDTQIKPKKH 88
           TI  QIKP+KH
Sbjct: 276 TIGGQIKPRKH 286



 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 101 TIDTQIKPKKH 133
           TI  QIKP+KH
Sbjct: 276 TIGGQIKPRKH 286


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 194 HVVGMRTNPVSCLT 153
           HVVG  T  + CLT
Sbjct: 206 HVVGGLTGLIGCLT 219


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  DLLNILLIHK*NQKNMAGK 98
           DLLN L  HK + +  +GK
Sbjct: 355 DLLNDLAAHKMHGRGRSGK 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,816
Number of Sequences: 438
Number of extensions: 1785
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)