Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    29   1.1  
At2g37010.1 68415.m04539 ABC transporter family protein contains...    27   3.3  
At2g03840.1 68415.m00345 senescence-associated family protein si...    27   3.3  
At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containi...    27   3.3  
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family...    27   4.3  
At5g04670.1 68418.m00475 expressed protein BRL protein, Homo sap...    27   5.7  
At1g48175.1 68414.m05377 deaminase-related similar to tRNA-speci...    27   5.7  

>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 267 KELEIINSE*EFIVLQL*YLIAILQPYCGSVHRIKKKKK 383
           +E+E +NSE  ++  QL  L A  QP    + R+K+ KK
Sbjct: 768 REIESLNSEHNYLEKQLASLEAASQPKTDEIDRLKELKK 806


>At2g37010.1 68415.m04539 ABC transporter family protein contains
           ABC transporter domain, Pfam:PF00005
          Length = 1063

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 138 QPCFFGFICVSIVACQ-PCFFGFIC 67
           QPC  GF C   +AC  PC  G  C
Sbjct: 178 QPCCEGFFCPQGLACMIPCPLGAYC 202



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 96  CQPCFFGFIC-VSIVCSVGLRIGYY 25
           CQPC  GF C   + C +   +G Y
Sbjct: 177 CQPCCEGFFCPQGLACMIPCPLGAY 201


>At2g03840.1 68415.m00345 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 278

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 169 RSPVLLTIHFSAMFLWFYLCINRSLPAMF 83
           +S  L  IHF   FLW ++ +++++  +F
Sbjct: 84  KSDCLFRIHFFIFFLWMFVVVSKAIFVIF 112


>At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containing
           protein contains multiple Pfam domains: PF01535: PPR
           repeat
          Length = 538

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 154 LTIHFSAMFLWFYLCINRSLPAMFFWFYLCINSMFSRSENRLLSIFHTP 8
           L +H S+ F +F L +NRS+P    + Y     +  +S   L S F TP
Sbjct: 102 LPLHASSAFSFFRLMVNRSVPRPNHFIY----PLVLKSTPYLSSAFSTP 146


>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
           protein
          Length = 242

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 112 CINRSLPAMFFWFYLCINSMFSR 44
           C  + L +M F+++ C  S+FSR
Sbjct: 3   CSQKHLTSMLFFYFFCFLSLFSR 25


>At5g04670.1 68418.m00475 expressed protein BRL protein, Homo
           sapiens, EMBL:AF005067
          Length = 766

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 164 RPGSSSSLLRDVCWMSGDTWR 226
           RP SS+ +     WM GD W+
Sbjct: 458 RPFSSNRITHATVWMGGDNWK 478


>At1g48175.1 68414.m05377 deaminase-related similar to tRNA-specific
           adenosine deaminase 2 (EC 3.5.4.-) (tRNA-specific
           adenosine-34 deaminase subunit TAD2) (Swiss-Prot:P47058)
           [Saccharomyces cerevisiae]
          Length = 122

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 114 CVSIVACQPCFFGFICVSIVCSVGLRIGYY 25
           CV  V C+PC    +C S +  +G++  YY
Sbjct: 28  CVLYVTCEPC---IMCASALSFLGIKEVYY 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,532,312
Number of Sequences: 28952
Number of extensions: 131152
Number of successful extensions: 284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)