Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0004
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E238 Cluster: Chromosome undetermined scaffold_74, wh...    34   4.3  
UniRef50_Q0USG1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.7  
UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;...    33   7.5  
UniRef50_Q5ANN7 Cluster: Putative uncharacterized protein; n=2; ...    33   9.9  
UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2; Euther...    33   9.9  

>UniRef50_A0E238 Cluster: Chromosome undetermined scaffold_74, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_74,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 624

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
 Frame = -2

Query: 689 TXSYVLXESAXPLRSFSNTANGIGVFDVSSIK-----SYTFNLNLTYSYELSNESPHQNP 525
           T +Y    S+    ++SN++N     + S+       SY ++ NLTYSY+  + S   + 
Sbjct: 95  TYNYTYQSSSTQYPTYSNSSNSSNSSNSSNTTNGSNGSYPYS-NLTYSYDYPSTSNSSSN 153

Query: 524 RLSWNRTHNNETI*KYCA*INYNNHN**RFAYRRCSLEKR 405
             S+N T+   TI +     NYN     R+   R  L  R
Sbjct: 154 SSSYNTTNQTSTINQTNGSSNYNRTINSRYIPSRLQLRVR 193


>UniRef50_Q0USG1 Cluster: Putative uncharacterized protein; n=1;
            Phaeosphaeria nodorum|Rep: Putative uncharacterized
            protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 1269

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 1    FYLXP---SEPKPT-SPARGAPCRSTNEALARRGRHGTTVAYIVDDSGSDHKFPTTTXL 165
            FY  P    +P P+  P R  P +STN   A+ G  G  +  +   S ++ K  TTT L
Sbjct: 1147 FYTSPPTQKDPSPSPEPVRNGPPQSTNSIFAQPGMKGKKIKIVSAQSKANGKTTTTTTL 1205


>UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 466

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +3

Query: 282 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPAIRESL 443
           LL  ++G D  L+V++CV+   KY ++TL +LG+  R   +  +QR  A R +L
Sbjct: 374 LLQDSIGGDAKLLVLLCVSPCQKYLAETLQSLGFGSR---ARQVQRVQAKRRNL 424


>UniRef50_Q5ANN7 Cluster: Putative uncharacterized protein; n=2;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 172

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 623 IGVFDVSSIKSYTFNLNLTYSYELSNESPHQNPRLSWNRTHNNETI 486
           +G+ +   I S    LN    Y +S+  P  N   SWN  HNN +I
Sbjct: 11  LGIEEPIDISSKNVPLNAFLIYTMSSTLPDHNSTNSWNEYHNNLSI 56


>UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2;
           Eutheria|Rep: Kinesin-like protein KIF25 - Homo sapiens
           (Human)
          Length = 384

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 282 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 428
           LL   LG D  L+VI+C++ S ++ + TL  LG+ +R   +  +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,120,873
Number of Sequences: 1657284
Number of extensions: 11411032
Number of successful extensions: 26097
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26069
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)