Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0004
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.3  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 554 LSNESPHQNPRLSWNRTHNNETI*KYCA*INYNNH 450
           LSN++ H N    +N  +NN     Y    NYNN+
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNNNNYNN--NYNNN 350


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 62  DRQGAPRAGEVGFGSEG 12
           D  G P   E+GF +EG
Sbjct: 206 DHYGVPTLEELGFDTEG 222


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 554 LSNESPHQNPRLSWNRTHNN 495
           LSN++ H N    +N  +NN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,207
Number of Sequences: 438
Number of extensions: 3662
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)