Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0003
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;...    33   7.5  
UniRef50_Q22E29 Cluster: Response regulator receiver domain cont...    33   7.5  
UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2; Euther...    33   9.9  

>UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 466

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +3

Query: 276 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPAIRESL 437
           LL  ++G D  L+V++CV+   KY ++TL +LG+  R   +  +QR  A R +L
Sbjct: 374 LLQDSIGGDAKLLVLLCVSPCQKYLAETLQSLGFGSR---ARQVQRVQAKRRNL 424


>UniRef50_Q22E29 Cluster: Response regulator receiver domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Response regulator receiver domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1466

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 617 YRVXHXXSIKSYTFNLNXTYXXELSNESPHQNPRLSWNRTHNN 489
           Y + H  ++KS  +N N T   +L  +   QNP L  N   NN
Sbjct: 404 YEIHHKSNLKSVNYNTNHTNPSQLIGKQATQNPILKRNICQNN 446


>UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2;
           Eutheria|Rep: Kinesin-like protein KIF25 - Homo sapiens
           (Human)
          Length = 384

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 276 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 422
           LL   LG D  L+VI+C++ S ++ + TL  LG+ +R   +  +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,530,818
Number of Sequences: 1657284
Number of extensions: 9614154
Number of successful extensions: 19392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19382
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)