Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0001
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    29   0.35 
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   1.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   2.5  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   5.7  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   5.7  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    24   7.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   10.0 

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 183 EGELSQAGIFFDDQFDEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARL 356
           +  L +  + F ++  + E+  YF+     S+  H  G       RRQ+ G T   RL
Sbjct: 17  DSSLDEDSLSFLEELQDPEL--YFKNDTFSSKSSHSDGTVTGDTLRRQSSGATALERL 72


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 160 RNSYFRPWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEK 339
           R+SYF+   + L   E    +    ++FE IL       + +  K  NN ++  GK  + 
Sbjct: 188 RSSYFKSKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQL 247

Query: 340 QD 345
            D
Sbjct: 248 ND 249


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 171 LQTLEGELSQAGIFFDDQFDERE 239
           ++TLE ELSQAG+   +Q  + +
Sbjct: 442 VRTLENELSQAGVNLQEQIHQND 464


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 156 LQKFILQTLEGE-LSQAGIFFDDQFDEREI 242
           L + +++ L+ + + QAG  FDD F+E +I
Sbjct: 784 LCEVVMEVLQKQHIVQAGDVFDDDFEEEDI 813


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 351
           E+F+ + D+ +  PD   +KA   T     +    + EH
Sbjct: 90  EQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEH 128


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 277 DEITVKASNNTVVVEGKHEEKQDEH 351
           ++I V   NNT   EG  +EK++ +
Sbjct: 421 EQINVNEENNTPETEGLEDEKEENN 445


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/23 (34%), Positives = 19/23 (82%), Gaps = 2/23 (8%)
 Frame = +1

Query: 223 NLTKEKFEVI--LDVQQFTPDEI 285
           ++ KEK E++  LD+++++P+E+
Sbjct: 478 SIEKEKVEIVPFLDIRKYSPNEV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,807
Number of Sequences: 5004
Number of extensions: 24110
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)