Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0001
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 29 1.8
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 1.8
03_04_0062 + 16965323-16966024 28 2.4
02_05_1160 + 34580680-34582659 28 3.1
03_06_0568 - 34778408-34778710,34779340-34779411,34779549-347796... 27 5.5
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 5.5
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 27 5.5
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 7.2
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 27 7.2
10_06_0162 - 11348250-11349531,11349571-11349671 26 9.5
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 26 9.5
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 26 9.5
02_01_0748 + 5566073-5567620 26 9.5
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 96 HGSEEGRSVILHQFIPLDLALQKFILQTLEGELSQAGIFFDDQFDEREI*G--YFRRSAI 269
HGSE R + H D +KF++ +G+ +A + DD E+ G YF
Sbjct: 577 HGSEVPRVLRSHDSKSKDENKEKFMVTVFKGDKERAKLRDDDPQKAAELAGPTYFTTHDC 636
Query: 270 HSRRDHGQGV 299
+ +HG+ +
Sbjct: 637 PEKYEHGKAL 646
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 251 ITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFRPM 96
I S S ++ EEDS LA+ A+QG+K E+ S+ E ++ S F+ +
Sbjct: 846 IQSRSSMIRCSEEEDSRLAEDAMQGMK-EWKSSDSERQGIVLAIEKSIFKDL 896
>03_04_0062 + 16965323-16966024
Length = 233
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 91 SAGPVVWRGARYAPSHPTNRETSLV 17
+AGP W +Y P TN + S++
Sbjct: 14 AAGPTAWSSQKYRPGFATNAQRSII 38
>02_05_1160 + 34580680-34582659
Length = 659
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 112 PSSDPCRSAGPVVWRGARYAPSHP 41
P+ PC+ G +V + +RY P HP
Sbjct: 193 PNPGPCQGNGGMVVKISRYGPPHP 216
>03_06_0568 -
34778408-34778710,34779340-34779411,34779549-34779635,
34779722-34779880,34780641-34780739,34780823-34780903,
34781007-34781461,34781550-34781679,34781952-34782743
Length = 725
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 213 FDDQFDEREI*GYFRRSAIHSRRDHGQGVEQHG 311
+DD+ E+ YFRR S++ G G+ + G
Sbjct: 497 YDDELRREELLNYFRRFQSASQKKGGSGIFRQG 529
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 205 ESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVV 315
E + +NL E E+I+D +F DE+ + +N+ ++
Sbjct: 843 EDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 261 SAIHSRRDHGQGVEQHGCRRRQARGETGRARL 356
+A RRD G G GCRRR+A+G+ A L
Sbjct: 65 AAASCRRDGGCG--GCGCRRRRAKGKPAAAEL 94
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 10 SIVPMMFRDWWDDWERIERPSRLLDQHFGMG 102
++ P +R W D+E I R +L QH GMG
Sbjct: 872 TLTPYRWR-WLRDYEFITRVDAVLRQHSGMG 901
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 28 FRDWWDDWERIERPS 72
F+ WWD ER E+PS
Sbjct: 652 FKGWWDKTERQEQPS 666
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 127 RITDRPSSDPCRSAGPVVWRGARYAPSHP 41
R RP+ DP A PV+ R A HP
Sbjct: 27 RFRRRPAVDPAAPAAPVLRRTAELLRGHP 55
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 178 PWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGF 357
P A++A+QE + + +E V + + TP E+ ++ + ++G H +
Sbjct: 112 PEDAAVAKQELNHQVIGGREISIVFAEENRKTPQEMRMRTRTSGRYMDGSHRRRSVSRSP 171
Query: 358 ISR--QFTPPVHPADR 399
SR ++P PA R
Sbjct: 172 RSRYHSYSPSPSPARR 187
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 51 GAYRAPLQTTGPALRHGS 104
GA APL TTG AL HG+
Sbjct: 44 GAGTAPLSTTGFALAHGA 61
>02_01_0748 + 5566073-5567620
Length = 515
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 126 G*QIVLLQTHAEVLVQ*SGGALDTLPVIPPIAKHHWYY 13
G ++++ HAE + + A DT+ + PP +W +
Sbjct: 321 GSKVIVTSRHAEHVAGLAAAAADTITLRPPPPAEYWLF 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,310,999
Number of Sequences: 37544
Number of extensions: 180627
Number of successful extensions: 660
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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