Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0001
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 40 7e-04
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 40 7e-04
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 39 0.001
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 37 0.007
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 36 0.012
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 36 0.012
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 36 0.012
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 35 0.021
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 28 3.2
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 27 5.6
SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5) 27 5.6
SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 27 5.6
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017) 27 7.4
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 26 9.8
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 26 9.8
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 26 9.8
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022) 26 9.8
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 39.9 bits (89), Expect = 7e-04
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 184 RASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFI- 360
+A A +E+ S KF + LDV F P+E+ VK + + V + E +EHGF
Sbjct: 9 KAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFT 66
Query: 361 SRQF 372
+RQF
Sbjct: 67 ARQF 70
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 39.9 bits (89), Expect = 7e-04
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+KF++ LDV++F P+EIT K N + V G + + E GF S++F
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEF 49
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 196 ARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFI-SRQF 372
A E+ + KF + LDV F P+E+ VK + + V + E +EHGF +RQF
Sbjct: 85 ATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQF 142
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 EKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+K E+ LDV+ + P+EI++K + + ++GKH + + EHG+ + +F
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKH-KSEGEHGYETSEF 83
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 253 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
LDV+++ P+EI+ K N V V+G+H + E GF ++F
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEF 50
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 232 KEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
++KF + +DV F P+ I V+ N ++V HE + + H +RQF P
Sbjct: 95 EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLP 147
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
+KF + +DV F PD I V+ N ++V HE + + H +RQF P
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
+KF + +DV F PD I V+ N ++V HE + + H +RQF P
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 382
Score = 35.1 bits (77), Expect = 0.021
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 193 LARQESSSTINLTKEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQ 369
L + S + L ++ E+ LDV+++ P+EI+ K N V V+G+H + GF ++
Sbjct: 225 LDEEVSCRLVYLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKE 283
Query: 370 F 372
F
Sbjct: 284 F 284
Score = 34.3 bits (75), Expect = 0.037
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
+KF + +DV F PD I V+ N ++V HE + + H +RQF P
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148
Score = 34.3 bits (75), Expect = 0.037
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
+KF + +DV F PD I V+ N ++V HE + + H +RQF P
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148
Score = 34.3 bits (75), Expect = 0.037
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
+KF + +DV F PD I V+ N ++V HE + + H +RQF P
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLP 148
Score = 34.3 bits (75), Expect = 0.037
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F
Sbjct: 4 ENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEF 50
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 35.1 bits (77), Expect = 0.021
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 KEKFEVI-LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQF 372
+ K E+ LDV+++ P+EI+ K N V V+G+H + GF ++F
Sbjct: 5 ENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEF 51
Score = 34.3 bits (75), Expect = 0.037
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH---GFISRQFTPP 381
+KF + +DV+ F P+ I V+ N ++V HE + + H +RQF P
Sbjct: 97 DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFILP 148
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 190 SLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTV 312
S A+Q +S +LT K EV + V Q TP E K SNN +
Sbjct: 396 SNAQQATSKEQHLTS-KGEVQVPVGQITPSEQASKTSNNAL 435
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 253 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTPPVHPA 393
L Q TP + + E K+EE DEHG I R+ T H A
Sbjct: 1165 LSTFQITPISQIPSSLTEKLQPETKYEEYVDEHGQIIRRTTKVKHTA 1211
>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 268 FTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTP 378
FTP E++VK + NT+++ +++ S Q TP
Sbjct: 368 FTPQELSVKPALNTILIPPHAQQRVSSGSGTSGQGTP 404
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +1
Query: 208 SSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 351
+S +NLT + + D T D++ + + N + +G H D H
Sbjct: 360 TSDDVNLTSDDVHLTSDGVHLTSDDVHLTSDNVHLTSDGVHLTSDDVH 407
>SB_839| Best HMM Match : Spond_N (HMM E-Value=2.5)
Length = 873
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 291 QGVEQHGCRRRQARGETGRARLH 359
+G+ GCRRRQ +G+ + LH
Sbjct: 313 EGLYSGGCRRRQGKGQRYDSHLH 335
>SB_49842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 197 AKLALQGLKYEFLKSEVEGNELMEDNRSSF 108
AK +L + YE+ S E E + +NR +F
Sbjct: 26 AKDSLSKIAYEYFSSGAENEETLRENREAF 55
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 175 RPWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 351
R RA+ R ++LTK + E+I+D +F I + N + K E D+H
Sbjct: 468 RMLRANFIRAMDMCCLDLTKREIEIIMDRMKFIMMMIVMYDGEND--EDDKDEGDDDDH 524
>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
Length = 280
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 157 FRNSYFRPW--RASLARQESSSTINLTKEKFEVIL 255
FR YFR W R S+ R SSS+ N++KE F+V++
Sbjct: 75 FRRRYFRHWSIRKSM-RCFSSSSRNVSKE-FDVVI 107
>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 111 LLQTHAEVLVQ*SGGALDTLPVIPPIAKH 25
L QTH V Q + T+PVIPPI+++
Sbjct: 72 LQQTHTRVESQLPTCTVTTVPVIPPISQN 100
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 267 IHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSV 371
+ RR+H GV CR RQ R R H P V
Sbjct: 504 VRERRNH-PGVAIRRCRTRQVSQRGERERRHHPGV 537
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 26.2 bits (55), Expect = 9.8
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Frame = +3
Query: 282 DHGQGVEQHGCRRR--QARGETGRARLH------FPSVHPAGTSCRP 398
+HG V R Q +GETGR LH P +H G + RP
Sbjct: 330 EHGSHVSDENATRPGFQGKGETGRPGLHGDGKTRRPGLHGDGKTSRP 376
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 325 KHEEKQDEHGFISRQFT 375
KHEE++D HG++ + T
Sbjct: 72 KHEEREDRHGYLKDKVT 88
>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
Length = 313
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 131 MEDNRSSFFRPMPKCWSSSL 72
M+D R +FFR + KCW S+
Sbjct: 224 MKDFRQTFFRWLIKCWRRSV 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,119,507
Number of Sequences: 59808
Number of extensions: 185094
Number of successful extensions: 533
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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