Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0001
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 179 GLKYEFLKSEVEGNELMEDN 120
           G+K   + S+VEGN + E+N
Sbjct: 214 GVKNNHVSSKVEGNGVHEEN 233


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 134 LMEDNRSSFFRPMPKCWSSSL 72
           L   N ++FFR M + W ++L
Sbjct: 338 LTRQNPAAFFRGMMQAWMTAL 358


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +3

Query: 213 FDDQFDEREI*GYFRRS--AIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPAGT 386
           F  +FDE  +     R   ++H+  ++G         R   + E  +  + +PS     T
Sbjct: 294 FGSRFDEERLTLRIHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNT 353

Query: 387 SC 392
            C
Sbjct: 354 KC 355


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 164 IHTSDLGGRA*PGR 205
           IH+SD  GRA  GR
Sbjct: 173 IHSSDTDGRALLGR 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,121
Number of Sequences: 438
Number of extensions: 1672
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)